HHsearch alignment for GI: 254781004 and conserved domain: cd00776

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.93  E-value=4.4e-05  Score=54.89  Aligned_cols=114  Identities=18%  Similarity=0.306  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             7899999999999887-689638555432443100011210012555420100145677782377434312577776520
Q gi|254781004|r  272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH  350 (652)
Q Consensus       272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~  350 (652)
T Consensus        23 ~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~---eg~a~-----~f~~~~------~~~~~yL~~Sp-----el~Kq   83 (322)
T cd00776          23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGGAE-----LFKVSY------FGKPAYLAQSP-----QLYKE   83 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCCCC-----CCCCCC------CCCCEEECCCH-----HHHHH
T ss_conf             9999999999999999988999997984007889---86546-----676210------58760015485-----88999


Q ss_pred             CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EEC-CHHHHHHHHHHHHHH
Q ss_conf             122223104320001000127876452000105635334421-010-537678878999999
Q gi|254781004|r  351 GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFC-TKEQMFNECLKIHNL  410 (652)
Q Consensus       351 ~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~-~~eq~~~e~~~~~~~  410 (652)
T Consensus        84 lli~--G~~-rVfei~~~FR~E~~~t~---rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~  139 (322)
T cd00776          84 MLIA--ALE-RVYEIGPVFRAEKSNTR---RHLSEFWMLEAEMAFIEDYNEVMDLIEELIKY  139 (322)
T ss_pred             HHHC--CCC-CEEEECCEEECCCCCCC---CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9753--424-43887261407999875---34788876525552332899999999999999