HHsearch alignment for GI: 254781004 and conserved domain: cd00858
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.95 E-value=3.7e-27 Score=207.22 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=95.7
Q ss_pred CCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEE
Q ss_conf 08873378089998579--6689999999999998798899975896636766655434898899987425325818999
Q gi|254781004|r 545 NLPLWLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIR 622 (652)
Q Consensus 545 ~~P~wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir 622 (652)
T Consensus 19 ~lP~~lAP~qv~IiPi~~~d~~~~~a~~i~~~L~~~gi~v~~Dd~~-s~G~K~~~~d~~giP~~ivIg~~~le~~~VtiR 97 (121)
T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSG-SIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIR 97 (121)
T ss_pred ECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHHCCCEEEEEECCEECCCEEEEE
T ss_conf 8788638837999974160777999999999998779779970388-831444678874898399992761037879999
Q ss_pred ECCCCCEEEECHHHHHHHHHHH
Q ss_conf 8898866334299999999873
Q gi|254781004|r 623 RFGSTTTQKVSLLDAIPILTKE 644 (652)
Q Consensus 623 ~R~~~~~~~i~lee~i~~l~~e 644 (652)
T Consensus 98 ~Rdt~~q~~v~i~el~~~i~~l 119 (121)
T cd00858 98 ERDSMRQVRVKIEELPSYLREL 119 (121)
T ss_pred ECCCCCEEEEEHHHHHHHHHHH
T ss_conf 9899957899999999999998