HHsearch alignment for GI: 254781004 and conserved domain: cd00862
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.90 E-value=3.6e-23 Score=179.69 Aligned_cols=101 Identities=24% Similarity=0.393 Sum_probs=94.8
Q ss_pred CCCCCCCCCCEEEEEEECC------HHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 8708873378089998579------6689999999999998798899975896-63676665543489889998742532
Q gi|254781004|r 543 KGNLPLWLSPIQAIVTTIT------SSAVEYAQEIANLLKSHHLSIETDFRNE-TINYKIREHSIKKIPIIIICGDKEAS 615 (652)
Q Consensus 543 ~g~~P~wLAP~QV~Iipi~------e~~~eya~~i~~~L~~~girV~~Ddr~~-~~G~Kir~a~l~giP~~ivIG~ke~e 615 (652)
T Consensus 1 GLvlPP~iAP~QVVIiPi~~k~~~~~~v~~~~~~i~~~L~~~~iRv~iD~rd~~~pG~K~~~wE~kGVPiRIEIGprDle 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 97368420585499997348723289999999999999986798899977878688888899998089779998715863
Q ss_pred CCCEEEEECCCCCEEEECHHHHHHHHHH
Q ss_conf 5818999889886633429999999987
Q gi|254781004|r 616 ERSIGIRRFGSTTTQKVSLLDAIPILTK 643 (652)
Q Consensus 616 ~~~Vtir~R~~~~~~~i~lee~i~~l~~ 643 (652)
T Consensus 81 ~~~v~v~rRD~~~K~~v~~~el~~~i~~ 108 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPE 108 (202)
T ss_pred CCCEEEEEECCCCEEEEEHHHHHHHHHH
T ss_conf 7918999917995789788999999999