HHsearch alignment for GI: 254781004 and conserved domain: cd02426
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.80 E-value=6.6e-19 Score=150.30 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=91.4
Q ss_pred CCCCCCCCEEEEEEECC---HHHHHHHHHHHHHHHHCCCEE----EEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCC
Q ss_conf 08873378089998579---668999999999999879889----99758966367666554348988999874253258
Q gi|254781004|r 545 NLPLWLSPIQAIVTTIT---SSAVEYAQEIANLLKSHHLSI----ETDFRNETINYKIREHSIKKIPIIIICGDKEASER 617 (652)
Q Consensus 545 ~~P~wLAP~QV~Iipi~---e~~~eya~~i~~~L~~~girV----~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~ 617 (652)
T Consensus 20 ~Lhp~LAP~Kvai~~~~~~~~eL~~~a~~l~~~L~~~gi~v~~~~~~d~-~~sIGkrY~r~DeiGtP~citvD~~TLedg 98 (128)
T cd02426 20 KLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQ-HSSLEQLLDKYDEMGVLFTLLISEQTLENG 98 (128)
T ss_pred ECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 4488747717999703688188899999999999873994354635454-347889887766428847999778743479
Q ss_pred CEEEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf 1899988988663342999999998731
Q gi|254781004|r 618 SIGIRRFGSTTTQKVSLLDAIPILTKES 645 (652)
Q Consensus 618 ~Vtir~R~~~~~~~i~lee~i~~l~~e~ 645 (652)
T Consensus 99 tVtlR~RDT~~QerI~I~dl~~yl~~~i 126 (128)
T cd02426 99 LLQLRSRDTTLKETIHISDLPDYLLRYI 126 (128)
T ss_pred CEEEEECCCCHHEEEEHHHHHHHHHHHH
T ss_conf 5898854760213576999899999986