HHsearch alignment for GI: 254781004 and conserved domain: pfam07973
>pfam07973 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.46 E-value=3.7e-08 Score=76.13 Aligned_cols=43 Identities=47% Similarity=0.839 Sum_probs=39.5
Q ss_pred CEEECCCC-CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 21302575-2010002355214442223333332111015775642068999
Q gi|254781004|r 171 VTLYRQGE-WFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221 (652)
Q Consensus 171 v~~y~~g~-~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riy 221 (652)
T Consensus 1 vrvv~ig~~~~~~C~GtHV~nT~~I~~-fki~-------k~~~~~~g~~RI~ 44 (44)
T pfam07973 1 VRVVRIGDFDVDLCGGTHVPNTGEIGA-FKIL-------KGDSKNKGLQRIY 44 (44)
T ss_pred CEEEEECCEEEECCCCCCCCCCCCCCE-EEEE-------ECCCCCCCCEECC
T ss_conf 979998991987877958788252012-9999-------7144828759629