Query gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:14:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781005.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1leh_A Leucine dehydrogenase; 26.9 47 0.0014 15.5 2.5 34 30-63 57-90 (137)
2 >1v9l_A Glutamate dehydrogenas 26.4 45 0.0013 15.6 2.3 30 29-58 81-110 (202)
3 >2tmg_A Protein (glutamate deh 25.9 52 0.0015 15.3 2.5 30 28-57 47-76 (148)
4 >1hwx_A GDH, glutamate dehydro 23.5 48 0.0014 15.5 2.0 29 30-58 103-131 (234)
5 >1t62_A Conserved hypothetical 20.1 63 0.0019 14.8 2.0 47 27-73 13-61 (147)
6 >2bma_A Glutamate dehydrogenas 19.7 62 0.0018 14.9 1.9 30 30-59 125-154 (248)
7 >1c1d_A L-phenylalanine dehydr 18.6 70 0.0021 14.6 2.0 30 31-60 56-85 (144)
8 >1gtm_A Glutamate dehydrogenas 17.4 82 0.0024 14.2 2.2 29 30-58 81-109 (208)
9 >1bgv_A Glutamate dehydrogenas 10.1 1.4E+02 0.0041 13.0 3.0 32 29-60 101-132 (201)
10 >1u3e_M HNH homing endonucleas 9.6 72 0.0021 14.5 -0.1 11 69-79 14-24 (40)
No 1
>>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} (A:1-137)
Probab=26.90 E-value=47 Score=15.53 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2899999999988753167677754332555787
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETLPKGGG 63 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetlpkggg 63 (85)
-+..|...|.-.-.-++.|.||||.+--++...-
T Consensus 57 dv~~LA~~Mt~K~al~~lp~GGgKgvI~~~p~~~ 90 (137)
T 1leh_A 57 DALRLARGMTYKNAAAGLNLGGGKTVIIGDPFAD 90 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 9999999999999982899887489996799867
No 2
>>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} (A:1-176,A:396-421)
Probab=26.41 E-value=45 Score=15.64 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 428999999999887531676777543325
Q gi|254781005|r 29 NGIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 29 ngirelgarmkqerkkadqpigggktgetl 58 (85)
.-+..|+..|.-.-.-++.|+||||.|-..
T Consensus 81 ~ev~~LA~~MT~K~Al~~lp~GGgKgGI~~ 110 (202)
T 1v9l_A 81 ADDVALAILMTLKNSLAGLPYGGAKGAVRV 110 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 999999999899887613876888626836
No 3
>>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} (A:33-180)
Probab=25.89 E-value=52 Score=15.29 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 442899999999988753167677754332
Q gi|254781005|r 28 ENGIRELGARMKQERKKADQPIGGGKTGET 57 (85)
Q Consensus 28 engirelgarmkqerkkadqpigggktget 57 (85)
..-+..|...|.-.-.-++.|+||||.|-.
T Consensus 47 ~~ev~~LA~~MT~K~Al~~lp~GGgKggI~ 76 (148)
T 2tmg_A 47 LDEVKALAFWMTWKTAVMNLPFGGGKGGVR 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 999999999988876013578898765996
No 4
>>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:1-207,A:475-501)
Probab=23.46 E-value=48 Score=15.48 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|...|--.-.-++.|.||||.|-..
T Consensus 103 ev~~LA~~MT~K~AlaglP~GGgKggI~~ 131 (234)
T 1hwx_A 103 EVKALASLMTYKCAVVDVPFGGAKAGVKI 131 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 99999999899998608998770558845
No 5
>>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein structure initiative; 3.00A {Enterococcus faecalis V583} (A:20-166)
Probab=20.09 E-value=63 Score=14.83 Aligned_cols=47 Identities=28% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 444289999999998875316767--77543325557870778535410
Q gi|254781005|r 27 PENGIRELGARMKQERKKADQPIG--GGKTGETLPKGGGRKISLDSNNL 73 (85)
Q Consensus 27 pengirelgarmkqerkkadqpig--ggktgetlpkgggrkisldsnnl 73 (85)
+..-.-+|.+-+..-+|.|.--.- -..-+|.||+-|...|-||+++-
T Consensus 13 ~~~ladeL~~LVl~G~KTAT~s~~~~y~~e~e~lP~vG~~~IVlD~~g~ 61 (147)
T 1t62_A 13 SSEMGNRLGQLVVSGRKTATCSSLDIYKMEEEQLPKAGQYDIILDGQSQ 61 (147)
T ss_dssp CHHHHHHHHHHHHHTSCCEEEEESTTSCTTTCCCCCTTCEEEEECTTSC
T ss_pred CHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 9899999999997497068850687774479989997887899859998
No 6
>>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} (A:1-223,A:446-470)
Probab=19.73 E-value=62 Score=14.89 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 289999999998875316767775433255
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETLP 59 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetlp 59 (85)
-+.-|+.-|--.---++.|.||||.|-...
T Consensus 125 ev~~LA~~MT~K~Al~gLp~GGgKggI~~d 154 (248)
T 2bma_A 125 IVKFLGFEQIFKNSLTGLSMGGGKGGSDFD 154 (248)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 999888888998875178867876599658
No 7
>>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} (A:1-144)
Probab=18.58 E-value=70 Score=14.59 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 899999999988753167677754332555
Q gi|254781005|r 31 IRELGARMKQERKKADQPIGGGKTGETLPK 60 (85)
Q Consensus 31 irelgarmkqerkkadqpigggktgetlpk 60 (85)
...|...|.-.-.-++.|.||||.+-..+.
T Consensus 56 v~~La~~MT~K~Al~~lp~GGgKg~I~~dp 85 (144)
T 1c1d_A 56 AGKLAGAMTLKMAVSNLPMGGGKSVIALPA 85 (144)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 999999999999970899887465883388
No 8
>>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} (A:1-182,A:394-419)
Probab=17.44 E-value=82 Score=14.23 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|...|--.-.-++.|.||||.|-..
T Consensus 81 ev~~LA~~MT~K~Al~~lp~GGgKggI~~ 109 (208)
T 1gtm_A 81 TVKALAAWMTWKTAVMDLPYGGGKGGIIV 109 (208)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999998789887504898884469957
No 9
>>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} (A:1-201)
Probab=10.06 E-value=1.4e+02 Score=13.03 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 42899999999988753167677754332555
Q gi|254781005|r 29 NGIRELGARMKQERKKADQPIGGGKTGETLPK 60 (85)
Q Consensus 29 ngirelgarmkqerkkadqpigggktgetlpk 60 (85)
.-+..|+..|.-.-.-++.|.||||.|-..+.
T Consensus 101 ~ev~~La~~MT~K~Al~~lp~GGgKggI~~dP 132 (201)
T 1bgv_A 101 SIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDP 132 (201)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 99999998888876441677678765994688
No 10
>>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, protein-DNA complex, , DNA binding protein/DNA complex; 2.92A {Bacillus phage SPO1} (M:67-106)
Probab=9.55 E-value=72 Score=14.52 Aligned_cols=11 Identities=64% Similarity=0.715 Sum_probs=8.2
Q ss_pred CCCCHHHHHHH
Q ss_conf 35410357654
Q gi|254781005|r 69 DSNNLSTELRS 79 (85)
Q Consensus 69 dsnnlstelrs 79 (85)
..|||||.||-
T Consensus 14 kdnnlstnlrw 24 (40)
T 1u3e_M 14 KDNNLSTNLRW 24 (40)
T ss_dssp TTCCCGGGEEE
T ss_pred CCCCCHHCCEE
T ss_conf 81783236107
Done!