Query gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:01:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781005.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bgva2 c.58.1.1 (A:1-194) Glu 21.7 25 0.0018 14.9 2.2 29 30-58 102-130 (194)
2 d1c1da2 c.58.1.1 (A:1-148) Phe 18.5 29 0.0021 14.6 2.0 30 30-59 55-84 (148)
3 d1v9la2 c.58.1.1 (A:4-179) Glu 16.8 35 0.0025 14.1 2.5 37 29-75 78-114 (176)
4 d1b26a2 c.58.1.1 (A:4-178) Glu 16.5 35 0.0026 14.1 2.3 37 29-75 77-113 (175)
5 d1hwxa2 c.58.1.1 (A:1-208) Glu 11.5 50 0.0036 13.3 2.2 30 29-58 102-131 (208)
6 d1gtma2 c.58.1.1 (A:3-180) Glu 9.9 57 0.0041 13.0 2.2 37 29-75 78-114 (178)
7 d3cr3a1 a.208.1.1 (A:1-192) PT 7.2 70 0.0051 12.5 1.0 24 39-62 22-45 (192)
8 d1leha2 c.58.1.1 (A:1-134) Leu 6.8 79 0.0058 12.2 2.5 32 31-62 58-89 (134)
9 d1t62a_ b.122.1.4 (A:) Hypothe 6.5 82 0.006 12.1 2.3 44 30-73 35-80 (166)
10 d1y7ya1 a.35.1.3 (A:5-73) Rest 5.0 1E+02 0.0074 11.6 2.8 22 26-47 2-23 (69)
No 1
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=21.68 E-value=25 Score=14.93 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|..-|.-.---++-|.||||.|-..
T Consensus 102 ev~~La~~MT~K~Al~~lp~GGgKggi~~ 130 (194)
T d1bgva2 102 IMKFLGFEQAFKDSLTTLPMGGAKGGSDF 130 (194)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCEEEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEECC
T ss_conf 99999888887554327874565431236
No 2
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}
Probab=18.48 E-value=29 Score=14.57 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 289999999998875316767775433255
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETLP 59 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetlp 59 (85)
-...|...|.-.---|+-|+||||.+-..+
T Consensus 55 dvl~LA~~MT~K~Alaglp~GGgKg~I~~d 84 (148)
T d1c1da2 55 DAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 999999998999875037778732587438
No 3
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=16.77 E-value=35 Score=14.14 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 42899999999988753167677754332555787077853541035
Q gi|254781005|r 29 NGIRELGARMKQERKKADQPIGGGKTGETLPKGGGRKISLDSNNLST 75 (85)
Q Consensus 29 ngirelgarmkqerkkadqpigggktgetlpkgggrkisldsnnlst 75 (85)
+-+..|..-|.-.-.-++-|.||||.|- ..|...+|.
T Consensus 78 ~ev~aLA~~MT~K~Al~~lp~GGgKggI----------~~dp~~~s~ 114 (176)
T d1v9la2 78 ADDVALAILMTLKNSLAGLPYGGAKGAV----------RVDPKKLSQ 114 (176)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCEEEEEE----------CSCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEE----------ECCCCCCCH
T ss_conf 9999999999999998288865765214----------358877997
No 4
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=16.51 E-value=35 Score=14.10 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 42899999999988753167677754332555787077853541035
Q gi|254781005|r 29 NGIRELGARMKQERKKADQPIGGGKTGETLPKGGGRKISLDSNNLST 75 (85)
Q Consensus 29 ngirelgarmkqerkkadqpigggktgetlpkgggrkisldsnnlst 75 (85)
+-+..|..-|.-.---++-|.||||-| |..|...+|.
T Consensus 77 ~ev~aLa~~MT~K~A~~~lP~GGgKgg----------i~~dP~~~s~ 113 (175)
T d1b26a2 77 DEVKALAFWMTWKTAVMNLPFGGGKGG----------VRVDPKKLSR 113 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCEEEEEE----------EECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCE----------EECCCCCCCH
T ss_conf 999999889888788507764565422----------5348778998
No 5
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.50 E-value=50 Score=13.31 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 428999999999887531676777543325
Q gi|254781005|r 29 NGIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 29 ngirelgarmkqerkkadqpigggktgetl 58 (85)
.-+.-|.+-|.-.---++-|.||||.|-..
T Consensus 102 ~ev~aLA~~MT~K~Al~~lP~GGgKggI~~ 131 (208)
T d1hwxa2 102 DEVKALASLMTYKCAVVDVPFGGAKAGVKI 131 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 899999999999998605444675432424
No 6
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=9.90 E-value=57 Score=12.99 Aligned_cols=37 Identities=38% Similarity=0.597 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 42899999999988753167677754332555787077853541035
Q gi|254781005|r 29 NGIRELGARMKQERKKADQPIGGGKTGETLPKGGGRKISLDSNNLST 75 (85)
Q Consensus 29 ngirelgarmkqerkkadqpigggktgetlpkgggrkisldsnnlst 75 (85)
+-+..|..-|.-.-.-++-|.||||-| |..|...+|.
T Consensus 78 ~ev~aLa~~MT~K~Al~~lp~GG~Kgg----------i~~dP~~~s~ 114 (178)
T d1gtma2 78 STVKALAAWMTWKTAVMDLPYGGGKGG----------IIVDPKKLSD 114 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEEEE----------EECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEE----------EECCCCCCCH
T ss_conf 999999999988887415777887505----------7248778887
No 7
>d3cr3a1 a.208.1.1 (A:1-192) PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL {Lactococcus lactis [TaxId: 1358]}
Probab=7.18 E-value=70 Score=12.51 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=18.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 998875316767775433255578
Q gi|254781005|r 39 KQERKKADQPIGGGKTGETLPKGG 62 (85)
Q Consensus 39 kqerkkadqpigggktgetlpkgg 62 (85)
+.+-.+.|+|+|-|-+|.++-.|-
T Consensus 22 ~d~L~~lD~~vgDGD~G~nm~~g~ 45 (192)
T d3cr3a1 22 KAYLSELDGPIGDGDHGANMARGM 45 (192)
T ss_dssp HHHHHHHTTTTSCSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 999998786878762899999999
No 8
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}
Probab=6.76 E-value=79 Score=12.22 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89999999998875316767775433255578
Q gi|254781005|r 31 IRELGARMKQERKKADQPIGGGKTGETLPKGG 62 (85)
Q Consensus 31 irelgarmkqerkkadqpigggktgetlpkgg 62 (85)
+..|...|.-.-.-++-|.||||.+-..+...
T Consensus 58 vlrLA~~MT~K~ala~lp~GGgK~vI~~dp~~ 89 (134)
T d1leha2 58 ALRLARGMTYKNAAAGLNLGGGKTVIIGDPFA 89 (134)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf 99999997887764178888855655459888
No 9
>d1t62a_ b.122.1.4 (A:) Hypothetical protein EF3133 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.47 E-value=82 Score=12.14 Aligned_cols=44 Identities=30% Similarity=0.209 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 2899999999988753167--6777543325557870778535410
Q gi|254781005|r 30 GIRELGARMKQERKKADQP--IGGGKTGETLPKGGGRKISLDSNNL 73 (85)
Q Consensus 30 girelgarmkqerkkadqp--igggktgetlpkgggrkisldsnnl 73 (85)
-.-+|.+-...-+|.|.-. .--...+|.+|+-|-..|-||+++-
T Consensus 35 lad~L~~LVl~G~KtAT~s~~~~y~~e~e~lP~vG~~~IvlD~~g~ 80 (166)
T d1t62a_ 35 MGNRLGQLVVSGRKTATCSSLDIYKMEEEQLPKAGQYDIILDGQSQ 80 (166)
T ss_dssp HHHHHHHHHHHTSCCEEEEESTTSCTTTCCCCCTTCEEEEECTTSC
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 9999999997498068852687773479989998887899859998
No 10
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=5.01 E-value=1e+02 Score=11.64 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8444289999999998875316
Q gi|254781005|r 26 DPENGIRELGARMKQERKKADQ 47 (85)
Q Consensus 26 dpengirelgarmkqerkkadq 47 (85)
|...-+-++|.+.|+.|++..-
T Consensus 2 D~~~~~~~~g~~ik~~R~~~gl 23 (69)
T d1y7ya1 2 DHYADLVKFGQRLRELRTAKGL 23 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 6388999999999999998399
Done!