RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781005|ref|YP_003065418.1| hypothetical protein
CLIBASIA_04530 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.5 bits (66), Expect = 0.19
 Identities = 27/132 (20%), Positives = 38/132 (28%), Gaps = 63/132 (47%)

Query: 5   GLIVASLISS---------------TV---IMSGCSE-----TLDP-------ENG---- 30
           GL+ A  I+                TV   I   C E     +L P       EN     
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335

Query: 31  -----IRELGARMKQERKKADQPIGGGKTGETLPKGGGRKISLDSNN-----------LS 74
                I  L       +++    +   KT   LP   G+++ +   N            S
Sbjct: 336 SPMLSISNL------TQEQVQDYV--NKTNSHLPA--GKQVEISLVNGAKNLVVSGPPQS 385

Query: 75  TELRSQN-FLRK 85
             L   N  LRK
Sbjct: 386 --LYGLNLTLRK 395


>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase,
          membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
          {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
          Length = 315

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 3  IKGLIVASLISSTVIMSGCS-ETLDP 27
           K L   SL + TV++SGC+   LDP
Sbjct: 7  NKSLGWLSLFAGTVLLSGCNSALLDP 32


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.311    0.132    0.358 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 676,229
Number of extensions: 26042
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 4
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.4 bits)