Query gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 125 No_of_seqs 106 out of 1338 Neff 7.1 Searched_HMMs 23785 Date Tue May 31 23:21:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781006.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1syy_A Ribonucleoside-diphosph 100.0 9.7E-38 4.1E-42 248.9 11.0 123 1-124 224-346 (346) 2 2rcc_A Ribonucleoside-diphosph 100.0 1E-35 4.3E-40 236.6 11.0 125 1-125 217-344 (346) 3 1mxr_A Ribonucleotide reductas 100.0 1.8E-33 7.5E-38 223.0 9.5 122 1-122 235-362 (375) 4 1h0o_A Ribonucleoside-diphosph 100.0 1.2E-32 5E-37 218.0 9.2 114 1-123 264-377 (390) 5 3n37_A Ribonucleoside-diphosph 100.0 2.3E-32 9.9E-37 216.2 10.4 120 1-123 189-311 (319) 6 1jk0_A RNR Y2, ribonucleoside- 100.0 6.1E-32 2.6E-36 213.7 7.1 114 1-123 290-403 (419) 7 2p1i_A Ribonucleotide reductas 100.0 6.7E-32 2.8E-36 213.4 7.2 113 1-122 223-335 (349) 8 3dhz_A Ribonucleotide reductas 100.0 6.5E-31 2.8E-35 207.4 9.0 119 1-122 199-320 (329) 9 1jk0_B RNR Y4, ribonucleoside- 100.0 2.3E-30 9.8E-35 204.1 5.2 113 1-122 217-329 (345) 10 2o1z_A Ribonucleotide reductas 99.9 2.1E-24 8.7E-29 167.9 5.9 89 1-97 222-310 (311) 11 3mjo_A Ribonucleotide reductas 99.9 4.5E-23 1.9E-27 159.8 9.9 98 1-101 198-296 (296) 12 3ee4_A Probable ribonucleoside 99.6 3.5E-16 1.5E-20 117.9 6.3 109 1-115 208-317 (323) 13 2oc5_A Hypothetical protein; N 92.9 0.52 2.2E-05 25.7 7.9 75 1-83 155-230 (244) 14 2uw1_A Desaturase, plastid del 45.6 16 0.00067 16.6 4.4 23 2-24 202-224 (338) 15 1za0_A Possible acyl-[acyl-car 44.3 17 0.0007 16.5 4.6 23 2-24 187-209 (275) 16 2inc_A Toluene, O-xylene monoo 41.5 18 0.00077 16.3 6.5 79 2-85 228-313 (491) 17 3ge3_A Toluene-4-monooxygenase 38.5 21 0.00086 16.0 3.5 80 2-86 229-315 (500) 18 2kp7_A Crossover junction endo 30.4 16 0.00068 16.6 1.4 39 79-120 4-44 (87) 19 3ez0_A Uncharacterized protein 25.9 33 0.0014 14.7 6.5 81 1-83 135-224 (225) 20 1b0n_B Protein (SINI protein); 24.9 12 0.0005 17.4 -0.1 30 42-71 9-38 (57) No 1 >1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A Probab=100.00 E-value=9.7e-38 Score=248.94 Aligned_cols=123 Identities=57% Similarity=1.023 Sum_probs=119.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.+++.+++++++|+|++++++++++|++|+.+||++|.+|++++|+.|++|||++++++||+|+||+||.+| T Consensus 224 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~~~Gl~~~~~~~Yv~y~an~rL~~l 303 (346) T 1syy_A 224 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERI 303 (346) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 14578899999999999985197875689999999999999999999999856588789999999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC Q ss_conf 97878898788868999983466573213100333343065778 Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 124 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~~ 124 (125) |++|+|+. +||+|||++.+++++++||||+|||+|+|||+++| T Consensus 304 G~~~~f~~-~nP~~w~~~~~~~~~~~nFFe~r~~~Y~k~~~~~~ 346 (346) T 1syy_A 304 GLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 (346) T ss_dssp TCCCSSCC-CCSCTTC---------------------------- T ss_pred CCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCC T ss_conf 99998999-99637899863867776878897210454577889 No 2 >2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Probab=100.00 E-value=1e-35 Score=236.64 Aligned_cols=125 Identities=29% Similarity=0.502 Sum_probs=116.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|++.++++++.++|+++++++++.|++++++||++|.+|++++|+.+++|||+++|++||+|+||+||.+| T Consensus 217 ~RDE~lH~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~e~~~~yi~y~an~~L~~l 296 (346) T 2rcc_A 217 NRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQL 296 (346) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 84376889999999999876266102567899999999999999999999981877688889999999999999999977 Q ss_pred CCCCCCC-CCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC Q ss_conf 9787889-8788868999983466-5732131003333430657-789 Q gi|254781006|r 81 GLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAEL-KWD 125 (125) Q Consensus 81 Gl~~~f~-~~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~-~~D 125 (125) |++++|+ ..+||+|||++++++. +++||||+|+|+|+|++.. +|| T Consensus 297 G~~~~f~~~~~nP~~w~~~~~~~~~~~~nFFE~~~t~Y~k~~~~~~~D 344 (346) T 2rcc_A 297 GMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 344 (346) T ss_dssp TCCCSCTTCCSCSCTTC------------------------------- T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC T ss_conf 999999877789588999864347652588889778753267778866 No 3 >1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ... Probab=100.00 E-value=1.8e-33 Score=223.00 Aligned_cols=122 Identities=25% Similarity=0.389 Sum_probs=110.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHH Q ss_conf 94037899999999999996770----00311229999999999999999985763087-60188999999999999999 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENP----HLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANR 75 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~p----e~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~ 75 (125) +|||++|+.|++.+++.++++.+ +.++++++++|++++.+||++|.+|++++++. +++|||++++++||+|+||+ T Consensus 235 ~RDE~~H~~f~~~l~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eave~E~~~~~~~~~~~~~~glt~~~~~~yi~y~an~ 314 (375) T 1mxr_A 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNI 314 (375) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 84288999999999999984378624566589999999999999999999999986368885898999999999999999 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCHHHHHHHCCC Q ss_conf 99985978788987888689999834665-732131003333430657 Q gi|254781006|r 76 RCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAEL 122 (125) Q Consensus 76 rL~~lGl~~~f~~~~nPl~W~~~~~~~~~-~~nFFE~r~t~Y~k~~~~ 122 (125) ||.+||++++|++.+||+|||+.++++.+ ++||||+|+|+|+||+.. T Consensus 315 rL~~LG~~~~f~~~~nP~~w~~~~~~~~~~~~nFFe~~~t~Y~~~~~~ 362 (375) T 1mxr_A 315 RMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQID 362 (375) T ss_dssp HHHHTTCCCCSCCCCCSCGGGGGTC----------------------- T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHEEECCCC T ss_conf 999779999999999983679998704887548766870001233445 No 4 >1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Probab=99.98 E-value=1.2e-32 Score=218.02 Aligned_cols=114 Identities=33% Similarity=0.632 Sum_probs=104.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|+|.|++.++. +..++.|++++.+||++|.+|++++++.|++|||+++|++||+|+||+||.+| T Consensus 264 ~RDE~lH~~f~~~l~~~l~~-------e~~~~~i~e~~~eavelE~~~~~~~~~~~~~Gln~~~~~~YIky~an~~L~~L 336 (390) T 1h0o_A 264 SRDEGLHCDFACLMFKHLVH-------KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336 (390) T ss_dssp HHHHHHHHHHHHHHHHTCSS-------CCCHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 98899999999999998740-------21699999999999999999999856787589899999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 9787889878886899998346657321310033334306577 Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++++|++ +||+|||+ .+++.+++||||+|||+|+|+|.++ T Consensus 337 G~~~~f~~-~NP~~wme-~i~~~~ktnFFE~rvt~Y~k~g~~~ 377 (390) T 1h0o_A 337 GFNKIFRV-ENPFDFME-NISLEGKTNFFEKRVGEYQRMGVMS 377 (390) T ss_dssp TCCCSSCC-CCSCGGGC-------------------------- T ss_pred CCCCCCCC-CCCHHHHH-HHCCCCCCCCCCCCHHHCEECCCCC T ss_conf 99998999-99609998-6224788777677723201565446 No 5 >3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Probab=99.98 E-value=2.3e-32 Score=216.21 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=111.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|++.|++.++++.|+.+++++++++++++++||++|.+|++++++. |++++++++||+|+||+||.+| T Consensus 189 ~RDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~e~~~eav~~E~~~~~~~~~~---g~~~~~~~~yiky~an~~L~~l 265 (319) T 3n37_A 189 IRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAE---TPWADDVKAFLCYNANKALMNL 265 (319) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT---SSCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHC T ss_conf 9788899999999999876528487765689999999999999999999998744---6422779999999999999977 Q ss_pred CCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 978788987---8886899998346657321310033334306577 Q gi|254781006|r 81 GLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~---~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++|+|+.. .||+||+...+++.+++||||+|||+|+||++.+ T Consensus 266 G~~~~f~~~~~~~nP~~w~~~~~~~~~~~nFFE~~~t~Y~k~~~~~ 311 (319) T 3n37_A 266 GYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMGKAVE 311 (319) T ss_dssp TCCCCSCGGGCCCCHHHHHHHCC----------------------- T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC T ss_conf 9998889865788956899872066645688788701021056787 No 6 >1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Probab=99.97 E-value=6.1e-32 Score=213.67 Aligned_cols=114 Identities=32% Similarity=0.563 Sum_probs=103.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.|++.|++.++.+. ..+.+.+++.+||++|.+|+.++++.+++|||+++|++||+|+||+||.+| T Consensus 290 ~RDE~lH~~f~~~L~~~l~~e~-------~~~~v~~~i~eavelE~e~~~~~l~~~l~Gln~~~m~~YIky~Anr~L~~L 362 (419) T 1jk0_A 290 CRDEGLHTDFACLLFAHLKNKP-------DPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAF 362 (419) T ss_dssp HHHHHHHHHHHHHHHHTCSSCC-------CHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 9899999999999999987321-------078999999999999999998732787579999999999999999999976 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC Q ss_conf 9787889878886899998346657321310033334306577 Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125) |++|+|++ +||+|||+ .++..+++||||+|||+|+|||++. T Consensus 363 G~~~~f~~-~NP~~wme-~i~~~~ktnFFE~rvt~Y~k~~v~~ 403 (419) T 1jk0_A 363 GNKKYYKV-ENPFDFME-NISLAGKTNFFEKRVSDYQKAGVMS 403 (419) T ss_dssp TCCCSSCC-CCCCGGGG-C------------------------ T ss_pred CCCCCCCC-CCCCHHHH-HHCCCCCCCCCCCCHHHHHHCCCCC T ss_conf 99987899-99836888-7345787777667688887623666 No 7 >2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} Probab=99.97 E-value=6.7e-32 Score=213.44 Aligned_cols=113 Identities=32% Similarity=0.647 Sum_probs=104.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.|++.|++.++.+.| ++.+++++++||++|.+|+.++++.+++|++++++++||+|+||+||.+| T Consensus 223 ~RDE~lH~~f~~~l~~~l~~e~~-------e~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~yi~y~an~~L~~L 295 (349) T 2p1i_A 223 SRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 295 (349) T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHHHHHHHHHHHHT T ss_pred HCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 54287899899999999752088-------78999999999999999999970225334569999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 978788987888689999834665732131003333430657 Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 122 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~ 122 (125) |++|+|+. +||+|||+ .+++.+++||||+|+|+|+|||+. T Consensus 296 G~~~~f~~-~nP~~w~~-~~~~~~ktnFFe~r~t~Y~k~~~~ 335 (349) T 2p1i_A 296 GCSKVFHS-KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 (349) T ss_dssp TCCCSSCC-CCSCCC--------------------------- T ss_pred CCCCCCCC-CCCCCHHH-HHCCCCCCCCCCCCHHHHHHCCCC T ss_conf 99999999-99954577-853576778888876764316666 No 8 >3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A 1uzr_A* Probab=99.97 E-value=6.5e-31 Score=207.42 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=108.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|++.||+.++++.|+.+++++++.|++++++||++|.+|++++|+. +|++ +++++||+|+||+||.+| T Consensus 199 ~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eav~~E~~~~~~~f~~--~gl~-~~i~~Yiky~an~rL~~l 275 (329) T 3dhz_A 199 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNL 275 (329) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCH-HHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCH-HHHHHHHHHHHHHHHHHC T ss_conf 8548999999999999887776799888779999999999999999999998643--4636-999999999999999977 Q ss_pred CCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 978788987---888689999834665732131003333430657 Q gi|254781006|r 81 GLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 122 (125) Q Consensus 81 Gl~~~f~~~---~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~ 122 (125) |++|+|++. .||++|+...+++.+++||||+|+|+|++|+.. T Consensus 276 G~~~~f~~~~~~~~P~~~~~~~~~~~~~~nFFE~~~t~Y~~~~~~ 320 (329) T 3dhz_A 276 GYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAE 320 (329) T ss_dssp TCCCSSCGGGCCCCHHHHHHHC----------------------- T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC T ss_conf 999888976678981669987205675678754763310213556 No 9 >1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Probab=99.96 E-value=2.3e-30 Score=204.06 Aligned_cols=113 Identities=23% Similarity=0.471 Sum_probs=102.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|++.|++.++.+. ..+.+++++++||++|.+|+.++++.+++|||++++++||+|+||+||.+| T Consensus 217 ~RDE~lH~~f~~~l~~~l~~e~-------~~~~i~~~~~eave~e~~~~~~~~~~~~~gl~~~~~~~Yi~y~an~~L~~l 289 (345) T 1jk0_B 217 CRDRGAYTDFSCLLFAHLRTKP-------NPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGF 289 (345) T ss_dssp HHHHHHHHHHHHHHHHTCSSCC-------CHHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 8689999999999999975100-------035899999999999999998545655336589999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 978788987888689999834665732131003333430657 Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 122 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~ 122 (125) |++|+|++ +||+|||+...+ .+++||||+|||+|+|+|++ T Consensus 290 G~~~~f~~-~nP~~w~~~~~~-~~ktnFFe~r~t~Y~k~~~~ 329 (345) T 1jk0_B 290 GNEKYYNA-VNPFEFMEDVAT-AGKTTFFEKKVSDYQKASDM 329 (345) T ss_dssp TCCCCC------------------------------------ T ss_pred CCCCCCCC-CCCHHHHHHHHC-CCCCCCCCCCHHHCCCCCCC T ss_conf 99987899-997489998737-67764457763312035556 No 10 >2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Probab=99.90 E-value=2.1e-24 Score=167.92 Aligned_cols=89 Identities=29% Similarity=0.603 Sum_probs=83.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.|++.+++.++.+.| ++.+++++++||++|.+|++++++.+++|||++++++||+|+||+||.+| T Consensus 222 ~RDE~lH~~f~~~l~~~l~~~~~-------~e~i~~~~~eavelE~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~~L~~l 294 (311) T 2o1z_A 222 SRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 294 (311) T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 81498999999999999853299-------99999999999999999999876798679999999999999999999977 Q ss_pred CCCCCCCCCCCCHHHHH Q ss_conf 97878898788868999 Q gi|254781006|r 81 GLEPLFKYTENPFPWMS 97 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~ 97 (125) |++|+|++ +||+|||+ T Consensus 295 Gl~~~f~~-~NP~~Wme 310 (311) T 2o1z_A 295 GSPKIFHA-KNPFNWMD 310 (311) T ss_dssp TCCCSSCC-CCCCTTTT T ss_pred CCCCCCCC-CCCCCCCC T ss_conf 89998999-99987616 No 11 >3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Probab=99.89 E-value=4.5e-23 Score=159.77 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=90.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) +|||++|+.|++.+|++++++.|+.+++++++.|++++++||++|.+|++++|+. +|++. ++++||+|+||+||++| T Consensus 198 ~RDE~lH~~f~~~l~~~~~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~~--~gl~~-~i~~yv~y~an~~L~~l 274 (296) T 3mjo_A 198 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWTE-DVKRFLRYNANKALNNL 274 (296) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCHH-HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHHHHHHHHHHHHC T ss_conf 9999999999999999887877899988889999999999999999999998702--57299-99999999999999978 Q ss_pred CCCCCCCCCCCCH-HHHHHHHC Q ss_conf 9787889878886-89999834 Q gi|254781006|r 81 GLEPLFKYTENPF-PWMSEVID 101 (125) Q Consensus 81 Gl~~~f~~~~nPl-~W~~~~~~ 101 (125) |++|+|+..++|. ||+..+++ T Consensus 275 G~~~~f~~~~~~~~P~i~~~l~ 296 (296) T 3mjo_A 275 GYEGLFPTDETKVSPAILSSLS 296 (296) T ss_dssp TCCCSSCGGGCCCCHHHHHHHC T ss_pred CCCCCCCCCCCCCCHHHHHCCC T ss_conf 8999999876888878872039 No 12 >3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Probab=99.62 E-value=3.5e-16 Score=117.86 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=86.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125) .|||++|+.||+.+++.++.|+|+.++ .+++.+++++.+|+++|.++....++..++|++.+ +||+|+||++|++| T Consensus 208 ~RDE~~H~~fg~~l~~~l~~e~p~~~~-~~~~~i~el~~~a~e~e~~~~~~~~~~~~~gl~~e---~yv~Yvad~~l~~L 283 (323) T 3ee4_A 208 GDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFDLSKD---DFLQYSTDKGMRRF 283 (323) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHH---HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHHHHHHHHC T ss_conf 966999999999999999874930448-99999999999999999999987077766799999---99999999999877 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCC-CCCCCCHHH Q ss_conf 97878898788868999983466573-213100333 Q gi|254781006|r 81 GLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTE 115 (125) Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~-nFFE~r~t~ 115 (125) |.-+. ...+|++|++-..+..... .|.+..... T Consensus 284 G~i~~--a~~~p~~~~d~~~~p~~l~~~f~~~~~~~ 317 (323) T 3ee4_A 284 GTISN--ARGRPVAEIDVDYSPAQLEDTFADEDRRT 317 (323) T ss_dssp HHHHT--TTTCCGGGTCC------------------ T ss_pred CCCCC--CCCCCHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 99312--44699776577789799999999999999 No 13 >2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} SCOP: a.25.1.6 Probab=92.88 E-value=0.52 Score=25.67 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=43.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9403789999999999999677000311229999999999999999985763087-601889999999999999999998 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 79 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~rL~~ 79 (125) |+||.+|+.||..-++.-. +.+++++.+.-++..-+-..-.+.+-.+ .++|+.++.+.+=.--.-...|.. T Consensus 155 VkDEY~HLN~Ge~WLk~~f--------~~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~ 226 (244) T 2oc5_A 155 VKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTE 226 (244) T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 6447765025899999999--------99999999988850549999999998789997788999999999999999997 Q ss_pred CCCC Q ss_conf 5978 Q gi|254781006|r 80 IGLE 83 (125) Q Consensus 80 lGl~ 83 (125) ||+. T Consensus 227 IGf~ 230 (244) T 2oc5_A 227 IGFN 230 (244) T ss_dssp HTCC T ss_pred CCCC T ss_conf 5975 No 14 >2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A Probab=45.55 E-value=16 Score=16.64 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 40378999999999999967700 Q gi|254781006|r 2 RDESLHLNFGIDVINQIKIENPH 24 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe 24 (125) +||..|..|+.++++.+.+-.|+ T Consensus 202 ~DE~rH~~fY~~~v~~~le~dPd 224 (338) T 2uw1_A 202 SDEKRHATAYTKIVEKLAEIDPD 224 (338) T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCH T ss_conf 89999999999999999853938 No 15 >1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: a.25.1.2 Probab=44.32 E-value=17 Score=16.52 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 40378999999999999967700 Q gi|254781006|r 2 RDESLHLNFGIDVINQIKIENPH 24 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe 24 (125) +||..|..|+..+++.+..-+|. T Consensus 187 ~DE~rH~~fy~~~v~~~le~dpd 209 (275) T 1za0_A 187 RDEVRHEEFFANLVTHCLDYTRD 209 (275) T ss_dssp HHHHHHHHHHHHHHHHHHHHSHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCH T ss_conf 88999999999999999865907 No 16 >2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 2rdb_A* Probab=41.45 E-value=18 Score=16.25 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=44.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHH--- Q ss_conf 403789999999999999677000311229999999999999999----9857630876018899999999999999--- Q gi|254781006|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFVGLNAPSCEQYMQFIAN--- 74 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~----~~~~~~~~~~~~Gl~~~~~~~Yiky~an--- 74 (125) +||+-|+.+|..+++.+.++.+. ...+..|...+=.+..+=. -..+|..+...-..+-. +-+-+++++ T Consensus 228 sDEaRH~~~G~~~l~~l~e~~~~---~~lQ~~vd~~fW~~~r~~~~l~g~~~dY~~p~~~~~~s~~--e~~~ew~~~~~~ 302 (491) T 2inc_A 228 TDESRHAQQGGPSLKILVENGKK---DEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFK--EFMLEWIVAQFE 302 (491) T ss_dssp HHHHHHHTTHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHH--HHHHHHTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHHHH T ss_conf 58989887589999999857877---9999999999998889999999989874485545287899--999999899999 Q ss_pred HHHHHCCCCCC Q ss_conf 99998597878 Q gi|254781006|r 75 RRCHQIGLEPL 85 (125) Q Consensus 75 ~rL~~lGl~~~ 85 (125) ++|..+|++++ T Consensus 303 ~~l~~yGl~~P 313 (491) T 2inc_A 303 RQLLDLGLDKP 313 (491) T ss_dssp HHHHHHTCCCC T ss_pred HHHHHHCCCCC T ss_conf 99998389987 No 17 >3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A Probab=38.47 E-value=21 Score=15.97 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=41.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCCCHHHHHHHHHHHH---H Q ss_conf 4037899999999999996770003112299999999999999999----85763087601889999999999999---9 Q gi|254781006|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA----YAHETMPKGFVGLNAPSCEQYMQFIA---N 74 (125) Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~----~~~~~~~~~~~Gl~~~~~~~Yiky~a---n 74 (125) +||+-|..+|..+++.+.+..+ .+..+..|...+-.+..+=.. ..+|..+...--.|-..+ +-++++ = T Consensus 229 sDEaRH~~~G~~~lk~l~e~~n---~~~lQ~~vd~wfwr~~~~~~~l~G~~~dY~~~~~~r~~s~~e~--~~ew~~g~~~ 303 (500) T 3ge3_A 229 TDESRHAQQGGPALQLLIENGK---REEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEF--MYEWIIGQFE 303 (500) T ss_dssp HHHHHHGGGHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHH--HHHHTTTTHH T ss_pred HHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHHHH T ss_conf 8999999858999999996776---6999999999999889999988888888448663225349999--9999889999 Q ss_pred HHHHHCCCCCCC Q ss_conf 999985978788 Q gi|254781006|r 75 RRCHQIGLEPLF 86 (125) Q Consensus 75 ~rL~~lGl~~~f 86 (125) ++|..+|++++- T Consensus 304 ~~L~~~Gl~~P~ 315 (500) T 3ge3_A 304 RSLIDLGLDKPW 315 (500) T ss_dssp HHHHHTTCCCCT T ss_pred HHHHHHCCCCCH T ss_conf 999982799863 No 18 >2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus} Probab=30.45 E-value=16 Score=16.61 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=23.5 Q ss_pred HCCCCCCCCCCCCCH--HHHHHHHCCCCCCCCCCCCHHHHHHHC Q ss_conf 859787889878886--899998346657321310033334306 Q gi|254781006|r 79 QIGLEPLFKYTENPF--PWMSEVIDLKKEKNFFETRVTEYQQGA 120 (125) Q Consensus 79 ~lGl~~~f~~~~nPl--~W~~~~~~~~~~~nFFE~r~t~Y~k~~ 120 (125) ++|+.|+= ...||+ .|+.++.+.....|- +++..|.++- T Consensus 4 ~~~~r~~P-s~~N~lfi~~L~e~~~~~~~k~~--k~~~aY~kA~ 44 (87) T 2kp7_A 4 RASVRPLP-VCPNPLFVRWLTEWRDEAASRGR--HTRFVFQKAL 44 (87) T ss_dssp ----CCCC-CSCCCHHHHHHHHHHHHHHHHTC--TTHHHHHHHH T ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHH T ss_conf 67889999-99889999999999999987073--5799999999 No 19 >3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like fold, structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP} Probab=25.93 E-value=33 Score=14.68 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=44.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH------HHHHHHCCCCCCCCCHHHHHHHH---HH Q ss_conf 9403789999999999999677000311229999999999999999------98576308760188999999999---99 Q gi|254781006|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI------AYAHETMPKGFVGLNAPSCEQYM---QF 71 (125) Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~------~~~~~~~~~~~~Gl~~~~~~~Yi---ky 71 (125) ++|+. |..|+...++......|..- ..+.-..+.++-++..+=. .-...+++.+..+-+.+.+.+.. .- T Consensus 135 l~e~~-h~~~~~~~l~~~i~~d~~~~-~rlalw~RRl~geal~~~~~v~~~~~~l~~l~~~~~~~~~~~~l~~~~~~l~~ 212 (225) T 3ez0_A 135 QASDE-TTEVLRERLRSALADDPRLA-SRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSGLIAGLAE 212 (225) T ss_dssp SCCHH-HHHHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHC-----CHHHHHHHHHHHHHHH T ss_pred HCCHH-HHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 73004-89999999999985585778-89999999889999998575234655789887214566778889999999999 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999985978 Q gi|254781006|r 72 IANRRCHQIGLE 83 (125) Q Consensus 72 ~an~rL~~lGl~ 83 (125) --.+||..|||- T Consensus 213 ~H~~RM~~LGLt 224 (225) T 3ez0_A 213 KHSKRMTQLGLT 224 (225) T ss_dssp HHHHHHHTTTCC T ss_pred HHHHHHHHCCCC T ss_conf 999999981889 No 20 >1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 Probab=24.87 E-value=12 Score=17.42 Aligned_cols=30 Identities=7% Similarity=0.143 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 999999857630876018899999999999 Q gi|254781006|r 42 TLLEIAYAHETMPKGFVGLNAPSCEQYMQF 71 (125) Q Consensus 42 ve~E~~~~~~~~~~~~~Gl~~~~~~~Yiky 71 (125) .++..+|.+.++.-.-.||+.+.+..|+.- T Consensus 9 ~eLD~EWv~Li~eA~~a~is~EEiR~~L~~ 38 (57) T 1b0n_B 9 FELDQEWVELMVEAKEANISPEEIRKYLLL 38 (57) T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 998899999999999949999999999982 Done!