BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score =  268 bits (684), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287

Query: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347

Query: 121 ELKWD 125
           ELKWD
Sbjct: 348 ELKWD 352


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score =  268 bits (684), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287

Query: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347

Query: 121 ELKWD 125
           ELKWD
Sbjct: 348 ELKWD 352


>gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score =  265 bits (677), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60

Query: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120

Query: 121 ELKWD 125
           ELKWD
Sbjct: 121 ELKWD 125


>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score =  265 bits (677), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60

Query: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120

Query: 121 ELKWD 125
           ELKWD
Sbjct: 121 ELKWD 125


>537021.9.peg.75_1 
          Length = 136

 Score =  263 bits (672), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 124/125 (99%), Positives = 124/125 (99%)

Query: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 12  MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 71

Query: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 72  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 131

Query: 121 ELKWD 125
            LKWD
Sbjct: 132 GLKWD 136


>537021.9.peg.612_1 
          Length = 53

 Score = 32.7 bits (73), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 100 IDLKKEKNFFETRVTEY 116
           +DLKKE NFFETR TEY
Sbjct: 37  MDLKKENNFFETRTTEY 53


>gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 222

 Score = 23.5 bits (49), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40
          GI   +Q+K+  P LW  +F    RT+L +
Sbjct: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 23.1 bits (48), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 55  KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 93
           +G   + A + E+Y++ I N   H + L     +T+N F
Sbjct: 518 EGIAQVYAATDEKYIKTIPNEDSHSLVLNSTSLFTQNRF 556


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 22.7 bits (47), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 78  HQIGLEPLFKYTEN---PFPWMSEVIDLKKEKNFFETRVTE 115
           HQ+GL P+FK  +     F   +  +    E NF    V+E
Sbjct: 572 HQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSE 612


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 22.3 bits (46), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 39  HEATLLEIAYAH----------ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 83
           H+  L E++ AH          +   KG +GL + +  + +  +++  C  IG+E
Sbjct: 126 HQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 21.9 bits (45), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 63  PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 94
           PS E  +     R  HQI LEP    T+  +P
Sbjct: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307


>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 440

 Score = 21.2 bits (43), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 58 VGLNAPSCEQYMQFIANRR 76
          + L+ PSC Q  +FI  ++
Sbjct: 23 IRLSGPSCFQVCEFICKKK 41


>gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 322

 Score = 20.8 bits (42), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 9   NFGIDVINQIKIENPHLW 26
           N   D++ +IK ENP L+
Sbjct: 173 NLDYDIVYEIKKENPDLF 190


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,549
Number of Sequences: 1233
Number of extensions: 3010
Number of successful extensions: 15
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 14
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)