RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781007|ref|YP_003065420.1| hypothetical protein
CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62]
(411 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.9 bits (106), Expect = 3e-05
Identities = 78/520 (15%), Positives = 135/520 (25%), Gaps = 210/520 (40%)
Query: 7 FLLGVL-RLKKCTRGVFLVITAILL----SSFVAIVDV--VV------DQVTVMQKTAWL 53
FL V ++ G F + + L + ++ D+ + + T+++ +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 54 Q------EVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKAL-------NTYNS--RDLS 98
+ + + S L R G N Q+ A+ + Y RDL
Sbjct: 124 KNYITARIMAKRPFDKKSNSAL--FRAVGEGNA---QL-VAIFGGQGNTDDYFEELRDLY 177
Query: 99 NTGSIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKK 158
T +V D L I S L + +K
Sbjct: 178 QT--YHVLVGD------------L-----IKFS------AETLSELIR-----TTLDAEK 207
Query: 159 VMYKQNIGLMIMPFAWDGYWLASRGKVADSKVHPPKYL-------------EYSHYYQ-- 203
++ Q GL I+ WL + D YL + +HY
Sbjct: 208 -VFTQ--GLNILE------WLENPSNTPDKD-----YLLSIPISCPLIGVIQLAHYVVTA 253
Query: 204 QYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYAT 263
+ L S A H ++ D +
Sbjct: 254 KLLGFT--PGELRS-----YLKGATGHSQGLV---TAVAIAETD---------------S 288
Query: 264 WDHFPYSFIKNVFDMTSNQFGDGQVL----TNTNHCFPHGASQNKYML------------ 307
W+ F S K + VL +P+ + +L
Sbjct: 289 WESFFVSVRKAI-----------TVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPS 336
Query: 308 -MLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-----RTGRDAITI----FS-VGFS-- 354
ML+I N L++ V+ + K + H + G + + S G +
Sbjct: 337 PMLSISN-LTQEQVQDY-VNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 355 ---------PDQDTR--YTLRQCA--------SDP--SKYYE-----INSD---ENVMPI 385
DQ +R ++ R+ + P S IN D NV
Sbjct: 393 LRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 386 AKSLA------------R----NVITNWFSQFTITVVDSW 409
AK + R ++ V W
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-W 490
Score = 39.9 bits (93), Expect = 0.001
Identities = 63/408 (15%), Positives = 94/408 (23%), Gaps = 206/408 (50%)
Query: 89 LNTYNSRDLS-NTGSIE-SIVKDAVILTKNVNSLP--LQFTVDIALSTTVQLRGSLLQMF 144
++ Y++R L+ + GS+E + +P F QL+ F
Sbjct: 1 MDAYSTRPLTLSHGSLEHVL------------LVPTASFFIAS-------QLQEQ----F 37
Query: 145 SQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYW----------LASR--GKVADSKVHP 192
++ +P +G+ L + G V+ V P
Sbjct: 38 NKI----------------------LPEPTEGFAADDEPTTPAELVGKFLGYVSS-LVEP 74
Query: 193 PKYLEYS--------HYYQQYLNRN---TLVKNFLSQIP------------YKNFCMA-- 227
K ++ + YL N L L + Y +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 228 ---PYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFG 284
+S L+ AVG + A FG
Sbjct: 135 RPFDKKSNSALFRAVG------EGNAQL--------VAI-------------------FG 161
Query: 285 DGQVLTNTNHCF-----------PHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCH 333
GQ NT+ F L+ LS EKV
Sbjct: 162 -GQ--GNTDDYFEELRDLYQTYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFT--Q 211
Query: 334 YM------HKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDP-SKYYEINSDENVMPI- 385
+ T PD+D Y S P S P+
Sbjct: 212 GLNILEWLENPSNT-------------PDKD--YL----LSIPIS-----------CPLI 241
Query: 386 -AKSLARNVITNWFSQFT-----------------------ITVVDSW 409
LA V+T FT I DSW
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Score = 39.2 bits (91), Expect = 0.002
Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 67/148 (45%)
Query: 5 KNF--------LLGV---LRLKKCTRGV-----------------FLVITAILLSSFVAI 36
KN L G+ LR K G+ FL + + S +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 37 VDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNL----YDLREAGRDNFIRHQIEKALNTY 92
D + ++++ + + + K++ YD T+
Sbjct: 435 A---SDLI--------NKDLVKNNV-SFNAKDIQIPVYD-------------------TF 463
Query: 93 NSRDLSNTGSIESIVKDAV--ILTKNVN 118
+ DL SI + V I+ V
Sbjct: 464 DGSDLRVLS--GSISERIVDCIIRLPVK 489
Score = 27.6 bits (61), Expect = 5.3
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 40 VVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD------NFIRHQ------IEK 87
VV++V ++T WL E++++ + DLR D NFI+ Q ++K
Sbjct: 1829 VVERVG--KRTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDIIELQK 1884
Query: 88 ALN 90
+L+
Sbjct: 1885 SLS 1887
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 29.8 bits (66), Expect = 1.1
Identities = 15/162 (9%), Positives = 44/162 (27%), Gaps = 19/162 (11%)
Query: 239 VGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPH 298
+ +S + + + + + + + +V + + + + F
Sbjct: 48 FSLMQFSNKFQ---THFTFEEFRRSSNPLS--LLASVHQLQGFTYTATAIQNVVHRLFHA 102
Query: 299 GASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQD 358
+ + I + + + V+ I +++G
Sbjct: 103 SYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAG---------IIRYAIGVGLAFQ 153
Query: 359 TRY---TLRQCASDPS--KYYEINSDENVMPIAKSLARNVIT 395
R L AS PS +++ + + I L +
Sbjct: 154 NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195
>3dra_B Geranylgeranyltransferase type I beta subunit;
geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
prenyltransferase, farnesyltransferase; HET: B3P GRG;
1.80A {Candida albicans}
Length = 390
Score = 29.3 bits (65), Expect = 1.6
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 10/124 (8%)
Query: 212 VKNFLSQIPYKNFCMAPYHYSSILYWAVGTLT--YSVDNKTTTREYYKDPYYATWDHFPY 269
L +P + +I+Y+ + L YY++ +
Sbjct: 13 FNRCLIGLPST-AQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENN 71
Query: 270 SFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVL 329
I +++ F N + P+ +S + L I + + ++KI L
Sbjct: 72 QIISFR---STHYFQKT----NQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFL 124
Query: 330 QDCH 333
C
Sbjct: 125 CKCQ 128
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 28.7 bits (63), Expect = 2.5
Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 331 DCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPS--KYYEINSDENVMPIAKS 388
+ + + + + + VG P + + +R K + ++S + +
Sbjct: 134 NFVRYVQGLK--KKKVIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQRDE 190
Query: 389 LARNV 393
+ +
Sbjct: 191 IVSYL 195
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 27.1 bits (59), Expect = 7.6
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 360 RYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVV 406
Y + +DP+++ +N D ++ +L R + +T+ ++
Sbjct: 523 SYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.134 0.404
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,532,244
Number of extensions: 158915
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 19
Length of query: 411
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 316
Effective length of database: 3,390,050
Effective search space: 1071255800
Effective search space used: 1071255800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)