RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781007|ref|YP_003065420.1| hypothetical protein
CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62]
         (411 letters)



>d1regx_ d.58.27.1 (X:) Translational regulator protein regA
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 122

 Score = 27.8 bits (62), Expect = 1.9
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 309 LAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPD 356
           L +   L+R  +   K + + Q CH + K+   G   I  F      D
Sbjct: 13  LKVKETLTRMGIANNKDKVLYQSCHILQKK---GLYYIVHFKEMLRMD 57


>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase
           {Rhodococcus erythropolis [TaxId: 1833]}
          Length = 211

 Score = 26.8 bits (59), Expect = 3.1
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 166 GLMIMPFAWDGYWLASRGKVADSKVHPPKYLEYSHYYQQYLNRNTLV--KNFLSQ 218
            LM    A  G +     +    ++ P  Y+   +Y +  +   TL+  K  L+Q
Sbjct: 38  SLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGVATLMVEKGILTQ 92


>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
           10090]}
          Length = 120

 Score = 26.2 bits (57), Expect = 5.7
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 174 WDGYWLASRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSS 233
              +   S GK  +       +     Y Q++ ++ TL  +  S   Y        + S+
Sbjct: 33  LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSA 92

Query: 234 ILYWAVGTLTYS 245
           + Y A     Y 
Sbjct: 93  VYYCAREDFRYH 104


>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 25.7 bits (56), Expect = 7.6
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 12/98 (12%)

Query: 94  SRDLSNTGSIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDI 153
           SR  +      +   +  I+   V +   +    +  +++V               K  I
Sbjct: 14  SRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSV---QQF---------KEAI 61

Query: 154 SRRKKVMYKQNIGLMIMPFAWDGYWLASRGKVADSKVH 191
           S+R K    Q + +       D   L   G      VH
Sbjct: 62  SKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVH 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,548,289
Number of extensions: 70818
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 13
Length of query: 411
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 324
Effective length of database: 1,213,086
Effective search space: 393039864
Effective search space used: 393039864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)