Query         gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 99
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 23:25:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781008.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1kmj_A Selenocysteine lyase; p  34.1      12 0.00051   17.7   1.2   28   72-99    378-405 (406)
  2 1t3i_A Probable cysteine desul  33.5      17 0.00073   16.8   2.0   29   71-99    385-413 (420)
  3 2gol_A Matrix protein P17 (MA)  33.5      21 0.00088   16.4   2.4   27   69-95     42-68  (133)
  4 1ed1_A GAG polyprotein, SIV MA  26.2      33  0.0014   15.3   2.4   26   69-94     41-66  (135)
  5 1eg5_A Aminotransferase; PLP-d  21.2      40  0.0017   14.8   2.0   27   72-98    349-375 (384)
  6 2nrq_A Hypothetical protein OR  19.6      19 0.00079   16.6   0.0   13   17-29     39-51  (159)
  7 1eoq_A GAG polyprotein capsid   19.3      29  0.0012   15.6   0.9   18   76-93     39-56  (96)
  8 2ogk_A Hypothetical protein; a  18.5      18 0.00077   16.7  -0.2   11   82-92    132-142 (146)
  9 1l6n_A GAG polyprotein; matrix  18.0      35  0.0015   15.1   1.1   25   69-93     41-65  (289)
 10 2vg0_A Short-chain Z-isoprenyl  17.1      36  0.0015   15.1   1.0    9   58-66      1-9   (227)

No 1  
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=34.05  E-value=12  Score=17.70  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=25.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0113533354798999999998777519
Q gi|254781008|r   72 MRLSSVVYATREDCQKILRALSEVSKLF   99 (99)
Q Consensus        72 mrlssvvyatredcqkilralsevsklf   99 (99)
                      .|+|--.|.|.||-.+.+.+|.++.|+|
T Consensus       378 vRvS~~~~nt~eDId~l~~~l~~i~r~~  405 (406)
T 1kmj_A          378 CRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9997889899999999999999999860


No 2  
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=33.50  E-value=17  Score=16.85  Aligned_cols=29  Identities=28%  Similarity=0.470  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             00113533354798999999998777519
Q gi|254781008|r   71 DMRLSSVVYATREDCQKILRALSEVSKLF   99 (99)
Q Consensus        71 dmrlssvvyatredcqkilralsevsklf   99 (99)
                      -.|+|--.|-|.||..+.+.+|.++-|.|
T Consensus       385 ~iRvS~~~~nt~~did~lv~~L~~~v~~~  413 (420)
T 1t3i_A          385 SARASLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             39997989999999999999999999986


No 3  
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=33.46  E-value=21  Score=16.38  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=19.8

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310011353335479899999999877
Q gi|254781008|r   69 MEDMRLSSVVYATREDCQKILRALSEV   95 (99)
Q Consensus        69 medmrlssvvyatredcqkilralsev   95 (99)
                      +|-..|..-...|.|.||+|+..|...
T Consensus        42 LeRFalnp~LLeT~eGC~qIl~qL~P~   68 (133)
T 2gol_A           42 LERFAVNPGLLETSEGCRQILGQLQPS   68 (133)
T ss_dssp             HHHTTBCGGGGGSHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             887706930112488999999986623


No 4  
>1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A*
Probab=26.23  E-value=33  Score=15.27  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=19.2

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31001135333547989999999987
Q gi|254781008|r   69 MEDMRLSSVVYATREDCQKILRALSE   94 (99)
Q Consensus        69 medmrlssvvyatredcqkilralse   94 (99)
                      +|...|..-...|.|.||+|+..|..
T Consensus        41 LeRfalnp~LLet~eGC~qil~ql~p   66 (135)
T 1ed1_A           41 LDRFGLAESLLENKEGCQKILSVLAP   66 (135)
T ss_dssp             HHHTTCCGGGGGSHHHHHHHHHHHGG
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             77760681134418899999998361


No 5  
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S beta lyase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.20  E-value=40  Score=14.81  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=23.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             011353335479899999999877751
Q gi|254781008|r   72 MRLSSVVYATREDCQKILRALSEVSKL   98 (99)
Q Consensus        72 mrlssvvyatredcqkilralsevskl   98 (99)
                      .|+|--.|.|.||..+.+.+|.++-+.
T Consensus       349 iRvS~~~ynt~edid~ll~aL~~iv~~  375 (384)
T 1eg5_A          349 IRISLCKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999658989999999999999999999


No 6  
>2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=19.63  E-value=19  Score=16.63  Aligned_cols=13  Identities=23%  Similarity=0.286  Sum_probs=4.4

Q ss_pred             EEEEEEEEEEECC
Q ss_conf             1477876542048
Q gi|254781008|r   17 KFDITIPIGVLDS   29 (99)
Q Consensus        17 kfditipigvlds   29 (99)
                      .+.+.---|-...
T Consensus        39 ~ie~~~~~Gh~Gn   51 (159)
T 2nrq_A           39 KKNVTTAQGHYGN   51 (159)
T ss_dssp             EEEEEEEECSSSC
T ss_pred             CEEEEEECCCCCC
T ss_conf             1589870455798


No 7  
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=19.30  E-value=29  Score=15.58  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             533354798999999998
Q gi|254781008|r   76 SVVYATREDCQKILRALS   93 (99)
Q Consensus        76 svvyatredcqkilrals   93 (99)
                      -.+--...||+.|||+|.
T Consensus        39 L~~qNANpdCk~iLral~   56 (96)
T 1eoq_A           39 CFRQKSQPDIQQLIRTAP   56 (96)
T ss_dssp             HHHHHSCHHHHHHHHHCC
T ss_pred             HHHHHCCHHHHHHHHHCC
T ss_conf             999855899999998578


No 8  
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=18.54  E-value=18  Score=16.71  Aligned_cols=11  Identities=36%  Similarity=0.504  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             79899999999
Q gi|254781008|r   82 REDCQKILRAL   92 (99)
Q Consensus        82 redcqkilral   92 (99)
                      +|.+.+.+|-+
T Consensus       132 ~E~~~~~~~el  142 (146)
T 2ogk_A          132 REKVIEFAREL  142 (146)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             79999999999


No 9  
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=17.99  E-value=35  Score=15.12  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3100113533354798999999998
Q gi|254781008|r   69 MEDMRLSSVVYATREDCQKILRALS   93 (99)
Q Consensus        69 medmrlssvvyatredcqkilrals   93 (99)
                      +|..-|..-...|.|.||+|+..|.
T Consensus        41 LeRFaLnpgLLET~EGCqqIi~qLq   65 (289)
T 1l6n_A           41 LERFAVNPGLLETSEGCRQILGQLQ   65 (289)
T ss_dssp             HHHTTSCGGGTTSHHHHHHHHHTTH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             7776178102332889999999856


No 10 
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=17.07  E-value=36  Score=15.05  Aligned_cols=9  Identities=56%  Similarity=1.243  Sum_probs=0.0

Q ss_pred             CCCCCEEEE
Q ss_conf             166621421
Q gi|254781008|r   58 DLPNHISII   66 (99)
Q Consensus        58 dlpnhisii   66 (99)
                      ++|+||.||
T Consensus         1 niP~HiaiI    9 (227)
T 2vg0_A            1 DLPRHIAVL    9 (227)
T ss_dssp             CCCSEEEEE
T ss_pred             CCCCEEEEE
T ss_conf             998778996


Done!