Query gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 99 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:25:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781008.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1kmj_A Selenocysteine lyase; p 34.1 12 0.00051 17.7 1.2 28 72-99 378-405 (406) 2 1t3i_A Probable cysteine desul 33.5 17 0.00073 16.8 2.0 29 71-99 385-413 (420) 3 2gol_A Matrix protein P17 (MA) 33.5 21 0.00088 16.4 2.4 27 69-95 42-68 (133) 4 1ed1_A GAG polyprotein, SIV MA 26.2 33 0.0014 15.3 2.4 26 69-94 41-66 (135) 5 1eg5_A Aminotransferase; PLP-d 21.2 40 0.0017 14.8 2.0 27 72-98 349-375 (384) 6 2nrq_A Hypothetical protein OR 19.6 19 0.00079 16.6 0.0 13 17-29 39-51 (159) 7 1eoq_A GAG polyprotein capsid 19.3 29 0.0012 15.6 0.9 18 76-93 39-56 (96) 8 2ogk_A Hypothetical protein; a 18.5 18 0.00077 16.7 -0.2 11 82-92 132-142 (146) 9 1l6n_A GAG polyprotein; matrix 18.0 35 0.0015 15.1 1.1 25 69-93 41-65 (289) 10 2vg0_A Short-chain Z-isoprenyl 17.1 36 0.0015 15.1 1.0 9 58-66 1-9 (227) No 1 >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Probab=34.05 E-value=12 Score=17.70 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 0113533354798999999998777519 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKLF 99 (99) Q Consensus 72 mrlssvvyatredcqkilralsevsklf 99 (99) .|+|--.|.|.||-.+.+.+|.++.|+| T Consensus 378 vRvS~~~~nt~eDId~l~~~l~~i~r~~ 405 (406) T 1kmj_A 378 CRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9997889899999999999999999860 No 2 >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Probab=33.50 E-value=17 Score=16.85 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=26.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 00113533354798999999998777519 Q gi|254781008|r 71 DMRLSSVVYATREDCQKILRALSEVSKLF 99 (99) Q Consensus 71 dmrlssvvyatredcqkilralsevsklf 99 (99) -.|+|--.|-|.||..+.+.+|.++-|.| T Consensus 385 ~iRvS~~~~nt~~did~lv~~L~~~v~~~ 413 (420) T 1t3i_A 385 SARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420) T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHT T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 39997989999999999999999999986 No 3 >2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A Probab=33.46 E-value=21 Score=16.38 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=19.8 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 310011353335479899999999877 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSEV 95 (99) Q Consensus 69 medmrlssvvyatredcqkilralsev 95 (99) +|-..|..-...|.|.||+|+..|... T Consensus 42 LeRFalnp~LLeT~eGC~qIl~qL~P~ 68 (133) T 2gol_A 42 LERFAVNPGLLETSEGCRQILGQLQPS 68 (133) T ss_dssp HHHTTBCGGGGGSHHHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCC T ss_conf 887706930112488999999986623 No 4 >1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A* Probab=26.23 E-value=33 Score=15.27 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=19.2 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31001135333547989999999987 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSE 94 (99) Q Consensus 69 medmrlssvvyatredcqkilralse 94 (99) +|...|..-...|.|.||+|+..|.. T Consensus 41 LeRfalnp~LLet~eGC~qil~ql~p 66 (135) T 1ed1_A 41 LDRFGLAESLLENKEGCQKILSVLAP 66 (135) T ss_dssp HHHTTCCGGGGGSHHHHHHHHHHHGG T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 77760681134418899999998361 No 5 >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S beta lyase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Probab=21.20 E-value=40 Score=14.81 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 011353335479899999999877751 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKL 98 (99) Q Consensus 72 mrlssvvyatredcqkilralsevskl 98 (99) .|+|--.|.|.||..+.+.+|.++-+. T Consensus 349 iRvS~~~ynt~edid~ll~aL~~iv~~ 375 (384) T 1eg5_A 349 IRISLCKYNTEEEVDYFLKKIEEILSF 375 (384) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999658989999999999999999999 No 6 >2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2 Probab=19.63 E-value=19 Score=16.63 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=4.4 Q ss_pred EEEEEEEEEEECC Q ss_conf 1477876542048 Q gi|254781008|r 17 KFDITIPIGVLDS 29 (99) Q Consensus 17 kfditipigvlds 29 (99) .+.+.---|-... T Consensus 39 ~ie~~~~~Gh~Gn 51 (159) T 2nrq_A 39 KKNVTTAQGHYGN 51 (159) T ss_dssp EEEEEEEECSSSC T ss_pred CEEEEEECCCCCC T ss_conf 1589870455798 No 7 >1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1 Probab=19.30 E-value=29 Score=15.58 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 533354798999999998 Q gi|254781008|r 76 SVVYATREDCQKILRALS 93 (99) Q Consensus 76 svvyatredcqkilrals 93 (99) -.+--...||+.|||+|. T Consensus 39 L~~qNANpdCk~iLral~ 56 (96) T 1eoq_A 39 CFRQKSQPDIQQLIRTAP 56 (96) T ss_dssp HHHHHSCHHHHHHHHHCC T ss_pred HHHHHCCHHHHHHHHHCC T ss_conf 999855899999998578 No 8 >2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2 Probab=18.54 E-value=18 Score=16.71 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=4.8 Q ss_pred HHHHHHHHHHH Q ss_conf 79899999999 Q gi|254781008|r 82 REDCQKILRAL 92 (99) Q Consensus 82 redcqkilral 92 (99) +|.+.+.+|-+ T Consensus 132 ~E~~~~~~~el 142 (146) T 2ogk_A 132 REKVIEFAREL 142 (146) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 79999999999 No 9 >1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1 Probab=17.99 E-value=35 Score=15.12 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=18.0 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 3100113533354798999999998 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALS 93 (99) Q Consensus 69 medmrlssvvyatredcqkilrals 93 (99) +|..-|..-...|.|.||+|+..|. T Consensus 41 LeRFaLnpgLLET~EGCqqIi~qLq 65 (289) T 1l6n_A 41 LERFAVNPGLLETSEGCRQILGQLQ 65 (289) T ss_dssp HHHTTSCGGGTTSHHHHHHHHHTTH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHC T ss_conf 7776178102332889999999856 No 10 >2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Probab=17.07 E-value=36 Score=15.05 Aligned_cols=9 Identities=56% Similarity=1.243 Sum_probs=0.0 Q ss_pred CCCCCEEEE Q ss_conf 166621421 Q gi|254781008|r 58 DLPNHISII 66 (99) Q Consensus 58 dlpnhisii 66 (99) ++|+||.|| T Consensus 1 niP~HiaiI 9 (227) T 2vg0_A 1 DLPRHIAVL 9 (227) T ss_dssp CCCSEEEEE T ss_pred CCCCEEEEE T ss_conf 998778996 Done!