Query gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 99 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:01:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781008.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1tocr1 g.8.1.2 (R:1A-56) Orni 46.5 2.2 0.00016 20.5 0.3 22 67-88 29-50 (57) 2 d1t3ia_ c.67.1.3 (A:) Probable 40.3 6.7 0.00049 17.8 2.0 29 71-99 379-407 (408) 3 d1jf9a_ c.67.1.3 (A:) NifS-lik 37.6 5.7 0.00041 18.2 1.2 28 72-99 377-404 (405) 4 d2gola1 a.61.1.1 (A:7-107) HIV 22.9 24 0.0017 14.7 2.4 26 69-94 35-60 (101) 5 d1ecwa_ a.61.1.1 (A:) SIV matr 22.4 25 0.0018 14.7 2.4 26 69-94 36-61 (114) 6 d1d1da1 a.28.3.1 (A:151-230) R 21.8 11 0.00082 16.6 0.5 19 76-94 42-60 (80) 7 d1qrjb1 a.28.3.1 (B:131-214) H 19.8 18 0.0013 15.4 1.2 16 78-93 44-59 (84) 8 d1eg5a_ c.67.1.3 (A:) NifS-lik 18.5 29 0.0021 14.3 2.0 27 72-98 349-375 (376) 9 d1qz9a_ c.67.1.3 (A:) Kynureni 15.4 31 0.0023 14.1 1.5 28 70-97 371-399 (404) 10 d2bu1a1 d.85.1.1 (A:1-129) MS2 12.1 42 0.0031 13.3 1.4 32 66-97 82-113 (129) No 1 >d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]} Probab=46.46 E-value=2.2 Score=20.53 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=16.0 Q ss_pred EHHHCCCHHHHHHHHHHHHHHH Q ss_conf 0031001135333547989999 Q gi|254781008|r 67 TCMEDMRLSSVVYATREDCQKI 88 (99) Q Consensus 67 tcmedmrlssvvyatredcqki 88 (99) ||.-.-.-.+--||+.+||||. T Consensus 29 tc~~spac~~egyas~~~cq~a 50 (57) T d1tocr1 29 TCLMSPACTSEGYASQHECQQA 50 (57) T ss_dssp EEEEEEEETTSSBSSHHHHHHH T ss_pred EEECCCCCCCCCCCCHHHHHHH T ss_conf 4534878688773038888775 No 2 >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Probab=40.33 E-value=6.7 Score=17.83 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=26.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 00113533354798999999998777519 Q gi|254781008|r 71 DMRLSSVVYATREDCQKILRALSEVSKLF 99 (99) Q Consensus 71 dmrlssvvyatredcqkilralsevsklf 99 (99) -.|+|--.|-|.||..+.+.+|.++-++| T Consensus 379 ~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408) T d1t3ia_ 379 SARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408) T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHT T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 09997999999999999999999999975 No 3 >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Probab=37.65 E-value=5.7 Score=18.22 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 0113533354798999999998777519 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKLF 99 (99) Q Consensus 72 mrlssvvyatredcqkilralsevsklf 99 (99) .|+|--.|-|.||..+.+++|.++-|+| T Consensus 377 iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405) T d1jf9a_ 377 CRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 9997889999999999999999999960 No 4 >d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]} Probab=22.92 E-value=24 Score=14.71 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=19.3 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31001135333547989999999987 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSE 94 (99) Q Consensus 69 medmrlssvvyatredcqkilralse 94 (99) +|...|+.-...|.|.||+|+..|.. T Consensus 35 LeRFalnp~LLeT~eGC~qil~qlqP 60 (101) T d2gola1 35 LERFAVNPGLLETSEGCRQILGQLQP 60 (101) T ss_dssp HHHTTBCGGGGGSHHHHHHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 87762694023359999999998463 No 5 >d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]} Probab=22.41 E-value=25 Score=14.65 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=19.7 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31001135333547989999999987 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSE 94 (99) Q Consensus 69 medmrlssvvyatredcqkilralse 94 (99) +|...|..-...|.|.|++|+..|.- T Consensus 36 LeRfalnp~LLeT~eGC~qIl~qlqP 61 (114) T d1ecwa_ 36 LDRFGLAESLLENKEGCQKILSVLAP 61 (114) T ss_dssp HHHTTCCGGGGGSHHHHHHHHHHHGG T ss_pred HHHHCCCCHHHHCHHHHHHHHHHHCC T ss_conf 88754794033259999999998475 No 6 >d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]} Probab=21.79 E-value=11 Score=16.55 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 5333547989999999987 Q gi|254781008|r 76 SVVYATREDCQKILRALSE 94 (99) Q Consensus 76 svvyatredcqkilralse 94 (99) -.+--...|||.|||+|.. T Consensus 42 L~~qNANpdCk~iLral~~ 60 (80) T d1d1da1 42 CFRQKSQPDIQQLIRAAPS 60 (80) T ss_dssp HHTTSSCHHHHHHHHTSCT T ss_pred HHHHHCCHHHHHHHHHCCC T ss_conf 9998528999999984799 No 7 >d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]} Probab=19.78 E-value=18 Score=15.40 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 3354798999999998 Q gi|254781008|r 78 VYATREDCQKILRALS 93 (99) Q Consensus 78 vyatredcqkilrals 93 (99) +--...|||+|||++. T Consensus 44 ~qNANpdCk~~lr~l~ 59 (84) T d1qrjb1 44 YSNANKECQKLLQARG 59 (84) T ss_dssp TTTBCHHHHHHHHHTT T ss_pred HHCCCHHHHHHHHHCC T ss_conf 9706699999998638 No 8 >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Probab=18.49 E-value=29 Score=14.28 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 011353335479899999999877751 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKL 98 (99) Q Consensus 72 mrlssvvyatredcqkilralsevskl 98 (99) .|+|--.|.|.||..+.+.+|.|+-++ T Consensus 349 iRiS~~~ynt~edid~l~~~L~~iv~~ 375 (376) T d1eg5a_ 349 IRISLCKYNTEEEVDYFLKKIEEILSF 375 (376) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999658989999999999999999963 No 9 >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Probab=15.36 E-value=31 Score=14.06 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.1 Q ss_pred HCCCHHHH-HHHHHHHHHHHHHHHHHHHH Q ss_conf 10011353-33547989999999987775 Q gi|254781008|r 70 EDMRLSSV-VYATREDCQKILRALSEVSK 97 (99) Q Consensus 70 edmrlssv-vyatredcqkilralsevsk 97 (99) .-.|+|-. +|.|.||..+.+.+|.|+-+ T Consensus 371 ~~lRiS~~h~ynt~~did~~~~~L~~vl~ 399 (404) T d1qz9a_ 371 RIMRFGFTPLYTTFTEVWDAVQILGEILD 399 (404) T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 86999799778999999999999999997 No 10 >d2bu1a1 d.85.1.1 (A:1-129) MS2 virus coat protein {Bacteriophage MS2 [TaxId: 12022]} Probab=12.07 E-value=42 Score=13.33 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=24.1 Q ss_pred EEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10031001135333547989999999987775 Q gi|254781008|r 66 ITCMEDMRLSSVVYATREDCQKILRALSEVSK 97 (99) Q Consensus 66 itcmedmrlssvvyatredcqkilralsevsk 97 (99) -...-.|.|.--.+||..||.-|..+|...-| T Consensus 82 wrsy~~meltipifat~dd~~li~kal~glfk 113 (129) T d2bu1a1 82 WRSYLNMELTIPIFATNSDCELIVKAMQGLLK 113 (129) T ss_dssp EEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS T ss_pred HHHHCCCEEEEEEEECCCCHHHHHHHHHHHHH T ss_conf 88540642766688618863127998566750 Done!