Query         gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 99
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:01:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781008.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1tocr1 g.8.1.2 (R:1A-56) Orni  46.5     2.2 0.00016   20.5   0.3   22   67-88     29-50  (57)
  2 d1t3ia_ c.67.1.3 (A:) Probable  40.3     6.7 0.00049   17.8   2.0   29   71-99    379-407 (408)
  3 d1jf9a_ c.67.1.3 (A:) NifS-lik  37.6     5.7 0.00041   18.2   1.2   28   72-99    377-404 (405)
  4 d2gola1 a.61.1.1 (A:7-107) HIV  22.9      24  0.0017   14.7   2.4   26   69-94     35-60  (101)
  5 d1ecwa_ a.61.1.1 (A:) SIV matr  22.4      25  0.0018   14.7   2.4   26   69-94     36-61  (114)
  6 d1d1da1 a.28.3.1 (A:151-230) R  21.8      11 0.00082   16.6   0.5   19   76-94     42-60  (80)
  7 d1qrjb1 a.28.3.1 (B:131-214) H  19.8      18  0.0013   15.4   1.2   16   78-93     44-59  (84)
  8 d1eg5a_ c.67.1.3 (A:) NifS-lik  18.5      29  0.0021   14.3   2.0   27   72-98    349-375 (376)
  9 d1qz9a_ c.67.1.3 (A:) Kynureni  15.4      31  0.0023   14.1   1.5   28   70-97    371-399 (404)
 10 d2bu1a1 d.85.1.1 (A:1-129) MS2  12.1      42  0.0031   13.3   1.4   32   66-97     82-113 (129)

No 1  
>d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=46.46  E-value=2.2  Score=20.53  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=16.0

Q ss_pred             EHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             0031001135333547989999
Q gi|254781008|r   67 TCMEDMRLSSVVYATREDCQKI   88 (99)
Q Consensus        67 tcmedmrlssvvyatredcqki   88 (99)
                      ||.-.-.-.+--||+.+||||.
T Consensus        29 tc~~spac~~egyas~~~cq~a   50 (57)
T d1tocr1          29 TCLMSPACTSEGYASQHECQQA   50 (57)
T ss_dssp             EEEEEEEETTSSBSSHHHHHHH
T ss_pred             EEECCCCCCCCCCCCHHHHHHH
T ss_conf             4534878688773038888775


No 2  
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Probab=40.33  E-value=6.7  Score=17.83  Aligned_cols=29  Identities=28%  Similarity=0.470  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             00113533354798999999998777519
Q gi|254781008|r   71 DMRLSSVVYATREDCQKILRALSEVSKLF   99 (99)
Q Consensus        71 dmrlssvvyatredcqkilralsevsklf   99 (99)
                      -.|+|--.|-|.||..+.+.+|.++-++|
T Consensus       379 ~vRiS~~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         379 SARASLYFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             09997999999999999999999999975


No 3  
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}
Probab=37.65  E-value=5.7  Score=18.22  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0113533354798999999998777519
Q gi|254781008|r   72 MRLSSVVYATREDCQKILRALSEVSKLF   99 (99)
Q Consensus        72 mrlssvvyatredcqkilralsevsklf   99 (99)
                      .|+|--.|-|.||..+.+++|.++-|+|
T Consensus       377 iRiS~~~ynt~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         377 CRASLAMYNTHEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             9997889999999999999999999960


No 4  
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.92  E-value=24  Score=14.71  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31001135333547989999999987
Q gi|254781008|r   69 MEDMRLSSVVYATREDCQKILRALSE   94 (99)
Q Consensus        69 medmrlssvvyatredcqkilralse   94 (99)
                      +|...|+.-...|.|.||+|+..|..
T Consensus        35 LeRFalnp~LLeT~eGC~qil~qlqP   60 (101)
T d2gola1          35 LERFAVNPGLLETSEGCRQILGQLQP   60 (101)
T ss_dssp             HHHTTBCGGGGGSHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             87762694023359999999998463


No 5  
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]}
Probab=22.41  E-value=25  Score=14.65  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31001135333547989999999987
Q gi|254781008|r   69 MEDMRLSSVVYATREDCQKILRALSE   94 (99)
Q Consensus        69 medmrlssvvyatredcqkilralse   94 (99)
                      +|...|..-...|.|.|++|+..|.-
T Consensus        36 LeRfalnp~LLeT~eGC~qIl~qlqP   61 (114)
T d1ecwa_          36 LDRFGLAESLLENKEGCQKILSVLAP   61 (114)
T ss_dssp             HHHTTCCGGGGGSHHHHHHHHHHHGG
T ss_pred             HHHHCCCCHHHHCHHHHHHHHHHHCC
T ss_conf             88754794033259999999998475


No 6  
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=21.79  E-value=11  Score=16.55  Aligned_cols=19  Identities=21%  Similarity=0.326  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             5333547989999999987
Q gi|254781008|r   76 SVVYATREDCQKILRALSE   94 (99)
Q Consensus        76 svvyatredcqkilralse   94 (99)
                      -.+--...|||.|||+|..
T Consensus        42 L~~qNANpdCk~iLral~~   60 (80)
T d1d1da1          42 CFRQKSQPDIQQLIRAAPS   60 (80)
T ss_dssp             HHTTSSCHHHHHHHHTSCT
T ss_pred             HHHHHCCHHHHHHHHHCCC
T ss_conf             9998528999999984799


No 7  
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=19.78  E-value=18  Score=15.40  Aligned_cols=16  Identities=31%  Similarity=0.580  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             3354798999999998
Q gi|254781008|r   78 VYATREDCQKILRALS   93 (99)
Q Consensus        78 vyatredcqkilrals   93 (99)
                      +--...|||+|||++.
T Consensus        44 ~qNANpdCk~~lr~l~   59 (84)
T d1qrjb1          44 YSNANKECQKLLQARG   59 (84)
T ss_dssp             TTTBCHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHCC
T ss_conf             9706699999998638


No 8  
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}
Probab=18.49  E-value=29  Score=14.28  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             011353335479899999999877751
Q gi|254781008|r   72 MRLSSVVYATREDCQKILRALSEVSKL   98 (99)
Q Consensus        72 mrlssvvyatredcqkilralsevskl   98 (99)
                      .|+|--.|.|.||..+.+.+|.|+-++
T Consensus       349 iRiS~~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         349 IRISLCKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999658989999999999999999963


No 9  
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}
Probab=15.36  E-value=31  Score=14.06  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=23.1

Q ss_pred             HCCCHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             10011353-33547989999999987775
Q gi|254781008|r   70 EDMRLSSV-VYATREDCQKILRALSEVSK   97 (99)
Q Consensus        70 edmrlssv-vyatredcqkilralsevsk   97 (99)
                      .-.|+|-. +|.|.||..+.+.+|.|+-+
T Consensus       371 ~~lRiS~~h~ynt~~did~~~~~L~~vl~  399 (404)
T d1qz9a_         371 RIMRFGFTPLYTTFTEVWDAVQILGEILD  399 (404)
T ss_dssp             TEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             86999799778999999999999999997


No 10 
>d2bu1a1 d.85.1.1 (A:1-129) MS2 virus coat protein {Bacteriophage MS2 [TaxId: 12022]}
Probab=12.07  E-value=42  Score=13.33  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=24.1

Q ss_pred             EEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10031001135333547989999999987775
Q gi|254781008|r   66 ITCMEDMRLSSVVYATREDCQKILRALSEVSK   97 (99)
Q Consensus        66 itcmedmrlssvvyatredcqkilralsevsk   97 (99)
                      -...-.|.|.--.+||..||.-|..+|...-|
T Consensus        82 wrsy~~meltipifat~dd~~li~kal~glfk  113 (129)
T d2bu1a1          82 WRSYLNMELTIPIFATNSDCELIVKAMQGLLK  113 (129)
T ss_dssp             EEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHCCCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             88540642766688618863127998566750


Done!