RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62] (99 letters) >gnl|CDD|32787 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]. Length = 126 Score = 26.4 bits (58), Expect = 1.7 Identities = 8/24 (33%), Positives = 11/24 (45%) Query: 11 IGEHDAKFDITIPIGVLDSPRSIR 34 I E FD+ IP+ L P + Sbjct: 103 IDEDGETFDVAIPVFRLAVPGLLH 126 >gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and metabolism]. Length = 405 Score = 25.7 bits (56), Expect = 2.8 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 73 RLSSVVYATREDCQKILRALSEVSKL 98 R S +Y T ED ++L AL + L Sbjct: 380 RASLHLYNTEEDVDRLLEALKKALAL 405 >gnl|CDD|29469 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to the molybdopterin_binding (MopB) superfamily of proteins.. Length = 375 Score = 24.4 bits (53), Expect = 7.0 Identities = 12/14 (85%), Positives = 12/14 (85%), Gaps = 1/14 (7%) Query: 82 REDCQKILRALSEV 95 RED KILRALSEV Sbjct: 362 RED-WKILRALSEV 374 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.135 0.398 Gapped Lambda K H 0.267 0.0662 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,135,845 Number of extensions: 50422 Number of successful extensions: 113 Number of sequences better than 10.0: 1 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 6 Length of query: 99 Length of database: 6,263,737 Length adjustment: 67 Effective length of query: 32 Effective length of database: 4,815,934 Effective search space: 154109888 Effective search space used: 154109888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (23.6 bits)