RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781008|ref|YP_003065421.1| hypothetical protein
CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
         (99 letters)



>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1,
           structural genomics, joint center for structural
           genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha
           JMP134} (A:24-41,A:273-367)
          Length = 113

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 72  MRLSSVVYATREDCQKILRALSEVSK 97
           +R++    +T E+  + L A +   +
Sbjct: 90  LRVT---VSTPEENAQFLEAFAASLQ 112


>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
           biosynthesis, pyridoxal phosphate dependent,
           transferase, acyltransferase; HET: LLP; 2.1A
           {Rhodobacter capsulatus} (A:22-57,A:298-401)
          Length = 140

 Score = 25.2 bits (55), Expect = 3.2
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 22  IPIGVLDSPRSIRIQCWSAYKYKHQLHMSD--LSDTVIDLP--NHISIITCMEDMRLSSV 77
           + + ++D    I           H   +SD  LSD  + +   N  ++    E +R +  
Sbjct: 60  LGMPIIDHGSHIV--PVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPS 117

Query: 78  VYATREDCQKILRALSEVSKLF 99
                +    ++ A+  +    
Sbjct: 118 PVHDLKQIDGLVHAMDLLWARC 139


>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis,
           pyridoxal 5'-phosphate, thiocysteine, aminoacrylate,
           enzyme-product complex; HET: PDA; 1.55A {Synechocystis
           SP} (A:1-25,A:294-390)
          Length = 122

 Score = 24.1 bits (52), Expect = 6.9
 Identities = 4/24 (16%), Positives = 8/24 (33%)

Query: 73  RLSSVVYATREDCQKILRALSEVS 96
           R         E+   +L  L++  
Sbjct: 98  RACCHYITDEEEINHLLARLADFG 121


>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase;
           2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate,
           coenzyme A, transferase, structural genomics; HET: PLP;
           2.00A {Escherichia coli} (A:27-56,A:297-401)
          Length = 135

 Score = 23.6 bits (51), Expect = 8.9
 Identities = 5/27 (18%), Positives = 9/27 (33%)

Query: 73  RLSSVVYATREDCQKILRALSEVSKLF 99
           R       T E   + + A + + K  
Sbjct: 105 RTQXSAAHTPEQITRAVEAFTRIGKQL 131


>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme,
           transferase; HET: 2OS PLP; 1.80A {Synechocystis SP}
           (A:1-37,A:302-420)
          Length = 156

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 73  RLSSVVYATREDCQKILRALSEVSKLF 99
           R S   Y T+E+    L++L    + F
Sbjct: 123 RASLYFYNTKEEIDLFLQSLQATIRFF 149


>3f0h_A Aminotransferase; RER070207000802, structural genomics,
           joint center for structural genomics, JCSG, protein
           structure initiative, PSI-2; HET: MSE LLP; 1.70A
           {Eubacterium rectale} (A:1-28,A:275-376)
          Length = 130

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 72  MRLSSVVYATREDCQKILRALSEV 95
            R+  +   T ED   ++ A  ++
Sbjct: 101 FRVGHIGALTHEDNTTLVNAFKDL 124


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 724,503
Number of extensions: 27749
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 15
Length of query: 99
Length of database: 4,956,049
Length adjustment: 58
Effective length of query: 41
Effective length of database: 2,995,359
Effective search space: 122809719
Effective search space used: 122809719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)