RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781008|ref|YP_003065421.1| hypothetical protein
CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
         (99 letters)



>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
           {Escherichia coli [TaxId: 562]}
          Length = 405

 Score = 28.0 bits (61), Expect = 0.21
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 73  RLSSVVYATREDCQKILRALSEVSKLF 99
           R S  +Y T E+  +++  L  + +L 
Sbjct: 378 RASLAMYNTHEEVDRLVTGLQRIHRLL 404


>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
           {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 408

 Score = 26.9 bits (58), Expect = 0.52
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 73  RLSSVVYATREDCQKILRALSEVSKLF 99
           R S   Y T+E+    L++L    + F
Sbjct: 381 RASLYFYNTKEEIDLFLQSLQATIRFF 407


>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA
          synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
          Length = 221

 Score = 26.0 bits (57), Expect = 0.97
 Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 7/65 (10%)

Query: 8  HSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLPNHISIIT 67
                 D        I           Q W+ Y  +    ++D +     +P       
Sbjct: 23 GHKYPLVDGALSKDAYIRSFQ-------QSWNEYAKRQGKSLADFASLCFHVPFTKMGKK 75

Query: 68 CMEDM 72
           +E +
Sbjct: 76 ALESI 80


>d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros
          moubata) [TaxId: 6938]}
          Length = 57

 Score = 24.6 bits (53), Expect = 2.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 67 TCMEDMRLSSVVYATREDCQK 87
          TC+     +S  YA++ +CQ+
Sbjct: 29 TCLMSPACTSEGYASQHECQQ 49


>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL,
          amidotransferase domain {Salmonella typhimurium [TaxId:
          90371]}
          Length = 262

 Score = 24.0 bits (51), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 47 LHMSDLSDTVIDLPNHISIITC 68
          +HMSDL    I L N  +++ C
Sbjct: 37 VHMSDLLGGRIGLGNFHALVAC 58


>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
           {Lactobacillus sp., strain 30a [TaxId: 1591]}
          Length = 462

 Score = 23.4 bits (49), Expect = 5.4
 Identities = 3/27 (11%), Positives = 8/27 (29%)

Query: 73  RLSSVVYATREDCQKILRALSEVSKLF 99
                   T      ++  L ++ +L 
Sbjct: 433 LFLMTPAETPAKMNNLITQLLQLQRLI 459


>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
          Length = 123

 Score = 23.2 bits (50), Expect = 6.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 11  IGEHDAKFDITIPIGVLDSPRS 32
           +GE+   F++ I   +L  PR+
Sbjct: 102 VGENGIPFEVPIAEFLLAMPRT 123


>d2nrqa1 d.77.1.2 (A:4-144) Hypothetical protein SSO0741
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 141

 Score = 23.2 bits (50), Expect = 6.3
 Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 74 LSSVVYATREDCQKILRALSEV 95
          +S  ++ T ED  KI+  +   
Sbjct: 5  ISVFIHET-EDYNKIVNTIESF 25


>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 376

 Score = 23.1 bits (48), Expect = 6.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 73  RLSSVVYATREDCQKILRALSEV 95
           R+S   Y T E+    L+ + E+
Sbjct: 350 RISLCKYNTEEEVDYFLKKIEEI 372


>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
           [TaxId: 562]}
          Length = 391

 Score = 22.6 bits (47), Expect = 9.3
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 73  RLSSVVYATREDCQKILRALSEV 95
           R S   + T E+    +  + + 
Sbjct: 353 RFSLGRFTTEEEIDYTIELVRKS 375


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,286
Number of extensions: 14298
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 18
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)