RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
         (750 letters)



>gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein
            [Function unknown].
          Length = 1176

 Score = 30.7 bits (69), Expect = 1.7
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 21/111 (18%)

Query: 404  MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIK----------LNHAFNFNADGSIGPI 453
                 RDQ R++L  +  +P +        R +K           +  F F+ DG     
Sbjct: 988  KSTSSRDQPRDLLDESDDEPLNTLTPKSAQRALKKQKRTYRKQKPDSGFKFSRDG----- 1042

Query: 454  PMMQSRLTIRDNVKHYANRK-RSIHDAENKSFNSMEQISTQKRINLEINSE 503
                 RL IRD  ++    K R   DA        ++   ++    +  SE
Sbjct: 1043 -----RLIIRDEERNNDKEKLREDSDANMADGEEDKKPPVKRFRKKKKFSE 1088


>gnl|CDD|37657 KOG2446, KOG2446, KOG2446, Glucose-6-phosphate isomerase
          [Carbohydrate transport and metabolism].
          Length = 546

 Score = 30.3 bits (68), Expect = 1.8
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKD-KRLFSYALKAFGLSD 66
           S ++  P     +R+     KH+   D F KD  R   ++L  F   D
Sbjct: 1  TSLLTNLPAWQKLQRHVESDGKHLDLKDLFEKDPDRFEKFSLTFFTQKD 49


>gnl|CDD|39796 KOG4596, KOG4596, KOG4596, Uncharacterized conserved protein
           [Function unknown].
          Length = 1936

 Score = 29.7 bits (66), Expect = 3.2
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD-NVKHYANRKRSIHDAENK 482
            S   K +  +   L H     + G+ GP          RD      +  KR++ +  N 
Sbjct: 11  RSTIMKPEGGKKAALGHKLPTTSGGTGGPSTSGLGSKRKRDARSALCSPPKRTLGNLANA 70

Query: 483 SFNSMEQISTQ 493
           S  S   +S  
Sbjct: 71  SLQSSHLVSPN 81


>gnl|CDD|110369 pfam01364, Peptidase_C25, Peptidase family C25. 
          Length = 349

 Score = 28.8 bits (64), Expect = 6.0
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 103 SYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
           S +  P     +SDIQH+ +I +    + + + +   +     KNI
Sbjct: 150 SAEGGPSADNGESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNI 195


>gnl|CDD|37273 KOG2062, KOG2062, KOG2062, 26S proteasome regulatory complex,
           subunit RPN2/PSMD1 [Posttranslational modification,
           protein turnover, chaperones].
          Length = 929

 Score = 28.0 bits (62), Expect = 9.4
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 52/222 (23%)

Query: 247 CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI 306
            + +V+++ +    +  +      L  P  F + Q  +F  + E  AD    L++E+D +
Sbjct: 184 LISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLL 243

Query: 307 VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
           ++     +QI F    S+S         Q+ LD             + +     + P+ K
Sbjct: 244 LA-----YQIAFDLYESAS---------QEFLDSVLDR--------LPADDARDEKPMEK 281

Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDR--DQLRNVLTSNPSDPD 424
           I SI   LSG+  ++         + LQF L   N ++  L+   + +RN +    +   
Sbjct: 282 IISI---LSGEETIK---------LYLQFLLRHNNTDLLILEEIKESVRNSVCHTAT--- 326

Query: 425 SYANK-----SKDDRLIKLN-----HAFN---FNADGSIGPI 453
             AN      +  D  ++ N      A N   F A  S+G I
Sbjct: 327 LIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVI 368


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,987,677
Number of extensions: 487010
Number of successful extensions: 1248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1246
Number of HSP's successfully gapped: 31
Length of query: 750
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 649
Effective length of database: 4,081,228
Effective search space: 2648716972
Effective search space used: 2648716972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.5 bits)