RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] (750 letters) >gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein [Function unknown]. Length = 1176 Score = 30.7 bits (69), Expect = 1.7 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 21/111 (18%) Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIK----------LNHAFNFNADGSIGPI 453 RDQ R++L + +P + R +K + F F+ DG Sbjct: 988 KSTSSRDQPRDLLDESDDEPLNTLTPKSAQRALKKQKRTYRKQKPDSGFKFSRDG----- 1042 Query: 454 PMMQSRLTIRDNVKHYANRK-RSIHDAENKSFNSMEQISTQKRINLEINSE 503 RL IRD ++ K R DA ++ ++ + SE Sbjct: 1043 -----RLIIRDEERNNDKEKLREDSDANMADGEEDKKPPVKRFRKKKKFSE 1088 >gnl|CDD|37657 KOG2446, KOG2446, KOG2446, Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]. Length = 546 Score = 30.3 bits (68), Expect = 1.8 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKD-KRLFSYALKAFGLSD 66 S ++ P +R+ KH+ D F KD R ++L F D Sbjct: 1 TSLLTNLPAWQKLQRHVESDGKHLDLKDLFEKDPDRFEKFSLTFFTQKD 49 >gnl|CDD|39796 KOG4596, KOG4596, KOG4596, Uncharacterized conserved protein [Function unknown]. Length = 1936 Score = 29.7 bits (66), Expect = 3.2 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%) Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD-NVKHYANRKRSIHDAENK 482 S K + + L H + G+ GP RD + KR++ + N Sbjct: 11 RSTIMKPEGGKKAALGHKLPTTSGGTGGPSTSGLGSKRKRDARSALCSPPKRTLGNLANA 70 Query: 483 SFNSMEQISTQ 493 S S +S Sbjct: 71 SLQSSHLVSPN 81 >gnl|CDD|110369 pfam01364, Peptidase_C25, Peptidase family C25. Length = 349 Score = 28.8 bits (64), Expect = 6.0 Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 103 SYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148 S + P +SDIQH+ +I + + + + + + KNI Sbjct: 150 SAEGGPSADNGESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNI 195 >gnl|CDD|37273 KOG2062, KOG2062, KOG2062, 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]. Length = 929 Score = 28.0 bits (62), Expect = 9.4 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 52/222 (23%) Query: 247 CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI 306 + +V+++ + + + L P F + Q +F + E AD L++E+D + Sbjct: 184 LISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLL 243 Query: 307 VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366 ++ +QI F S+S Q+ LD + + + P+ K Sbjct: 244 LA-----YQIAFDLYESAS---------QEFLDSVLDR--------LPADDARDEKPMEK 281 Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDR--DQLRNVLTSNPSDPD 424 I SI LSG+ ++ + LQF L N ++ L+ + +RN + + Sbjct: 282 IISI---LSGEETIK---------LYLQFLLRHNNTDLLILEEIKESVRNSVCHTAT--- 326 Query: 425 SYANK-----SKDDRLIKLN-----HAFN---FNADGSIGPI 453 AN + D ++ N A N F A S+G I Sbjct: 327 LIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVI 368 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0615 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 8,987,677 Number of extensions: 487010 Number of successful extensions: 1248 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1246 Number of HSP's successfully gapped: 31 Length of query: 750 Length of database: 6,263,737 Length adjustment: 101 Effective length of query: 649 Effective length of database: 4,081,228 Effective search space: 2648716972 Effective search space used: 2648716972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (27.5 bits)