RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
(750 letters)
>gnl|CDD|148384 pfam06748, DUF1217, Protein of unknown function (DUF1217). This
family represents a conserved region that is found
within bacterial proteins, most of which are
hypothetical. Some members contain multiple copies.
Length = 150
Score = 111 bits (281), Expect = 5e-25
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + F+ ++ +SDL DP SFAN D RY+E ++FNF G L Q
Sbjct: 3 GLEDMIYAKAFIKKVLESDLSDPDSFANKLSDKRYREFAAAFNFGADGTL------ATQT 56
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
T D Y Q +E+ E++ + LALYF+R I + Y+IL D L +V L
Sbjct: 57 AAQTQATVDKYLRQSLEEAAGEQNEGVRLALYFRRKAGTITSAYDILADPALREVALTAL 116
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVE 688
L + L K+ ++KK + ++D D K V
Sbjct: 117 GLPSSVSALDIDKQAELIKKKLDLSDLSDPKSVV 150
Score = 96.9 bits (242), Expect = 2e-20
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPP-KVIQSDIQH 119
AFGL DM +A+ FIKK+LESDLSDP S N+L+ +Y+ FA +++F Q+ Q
Sbjct: 1 AFGLEDMIYAKAFIKKVLESDLSDPDSFANKLSDKRYREFAAAFNFGADGTLATQTAAQT 60
Query: 120 KTIIQDYKQSHQHKEEVALEESK----YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ + Y + + E YFR+ I S + D L + L + +
Sbjct: 61 QATVDKYLRQSLEEAAGEQNEGVRLALYFRRKAGTITSAYDILADPALREVALTALGLPS 120
Query: 176 KYISLP------FLKDVLTLG-LANPKKY 197
+L +K L L L++PK
Sbjct: 121 SVSALDIDKQAELIKKKLDLSDLSDPKSV 149
Score = 75.7 bits (187), Expect = 4e-14
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 27/169 (15%)
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
A+ L + ++ VL S+ SDPDS+ANK D R + AFNF ADG+ Q+
Sbjct: 1 AFGLEDMIYAKAFIKKVLESDLSDPDSFANKLSDKRYREFAAAFNFGADGT----LATQT 56
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFE 518
+ V Y + E R+ L Y+ TI S
Sbjct: 57 AAQTQATVDKYLRQSLEEAAGEQN---------EGVRLAL-------YFRRKAGTITSAY 100
Query: 519 ELLANKRILNFLLESKGIDSQKVREDFL--CEIFK-----SDLKDPKSF 560
++LA+ + L + G+ S D E+ K SDL DPKS
Sbjct: 101 DILADPALREVALTALGLPSSVSALDIDKQAELIKKKLDLSDLSDPKSV 149
Score = 59.2 bits (144), Expect = 4e-09
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 182 FLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF 241
F+K VL L++P + + D R+R A F F DG+L T Q + V Y
Sbjct: 13 FIKKVLESDLSDPDSFANKLSDKRYREFAAAFNFGADGTL----ATQTAAQTQATVDKYL 68
Query: 242 NNTIDCVPIVSDQN-------YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+++ +QN Y++ +++S D L DP L ++ +L
Sbjct: 69 RQSLE--EAAGEQNEGVRLALYFRRKAGTITSAYDILADPALREVALTAL 116
Score = 51.9 bits (125), Expect = 6e-07
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGL------SDMSHAEKFIKKILE-SDLSDPK 86
Y+R + I++ + + D L AL A GL D+ + IKK L+ SDLSDPK
Sbjct: 88 YFRRKAGTITSAYDILADPALREVALTALGLPSSVSALDIDKQAELIKKKLDLSDLSDPK 147
Query: 87 SLV 89
S+V
Sbjct: 148 SVV 150
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 32.3 bits (74), Expect = 0.49
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 476 IHDAENKSFNSM-EQISTQKRINLEINSEVDYYTLNI----NTIHSFEEL-LANKRILNF 529
+H A + NS+ E + KR +INSE+D LNI H E L NK+I+
Sbjct: 358 VHGANRLASNSLLEGLVFSKRGAEKINSEIDNIKLNITKVYTLKHDVEYYSLLNKKIIIK 417
Query: 530 LLESKGIDSQ 539
+E D +
Sbjct: 418 EIEKLRGDLK 427
>gnl|CDD|165240 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
Length = 238
Score = 31.3 bits (71), Expect = 0.83
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 32/171 (18%)
Query: 513 TIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL-----------KDPKSFA 561
+ +++ L +++I+ + + I + I+KS K K
Sbjct: 41 SFCNWKNLKRSRQIIINISIEENIKV----DKLSFRIYKSKYTKQIHGVFIHPKLLKYVL 96
Query: 562 NTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNI 621
N + +++S N E + K + N I+ + M +K N
Sbjct: 97 NWISEEYCAKVLSIIN-----EYNQKILKNKPSNDKINYIYMRKEEDMFYAIINKKGKNY 151
Query: 622 ALALYFKRTIPNIRNHYEILGDSK--------LFKVVSKKLKLSPYFAVLP 664
F +TIP++ + YE L + + KV K++K + YF +L
Sbjct: 152 ---KKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIK-NMYFGILS 198
>gnl|CDD|166137 PLN02496, PLN02496, probable phosphopantothenoylcysteine
decarboxylase.
Length = 209
Score = 28.8 bits (64), Expect = 5.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 703 DYKKALFSSPNQNKDPWNNSF 723
DY K LF +P N WNN F
Sbjct: 130 DYSKPLFVAPAMNTFMWNNPF 150
>gnl|CDD|128752 smart00476, DNaseIc, deoxyribonuclease I. Deoxyribonuclease I
catalyzes the endonucleolytic cleavage of
double-stranded DNA. The enzyme is secreted outside the
cell and also involved in apoptosis in the nucleus.
Length = 276
Score = 28.2 bits (63), Expect = 7.5
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 18/72 (25%)
Query: 53 RLFSYALKAFGLSDMSHAE--KFIKKIL------------ESDLSDPKSLVNQLNS-LKY 97
R+ ++ +++FG S MS+A I KIL +SDLS L++QLNS
Sbjct: 19 RICAFNIQSFGDSKMSNATLMSIIVKILSRYDIALVQEVRDSDLSAVPKLMDQLNSDSPN 78
Query: 98 QYFARSYDFSPP 109
Y SY S P
Sbjct: 79 TY---SYVSSEP 87
>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase,
Na(+)-translocating, F subunit. This model represents
the NqrF subunit of the six-protein, Na(+)-pumping
NADH-quinone reductase of a number of marine and
pathogenic Gram-negative bacteria. This oxidoreductase
complex functions primarily as a sodium ion pump.
Length = 405
Score = 27.8 bits (62), Expect = 9.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 323 SSSTKIQQDSQI---QKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQ 379
S K++QD I +++ + K C+++ +D + + IK+ L L +S+ G Q
Sbjct: 107 SCQVKVKQDMSIEIPEEIFGVKKWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQ 166
Query: 380 LEGP 383
+E P
Sbjct: 167 IEAP 170
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 12,018,926
Number of extensions: 786983
Number of successful extensions: 1641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1634
Number of HSP's successfully gapped: 37
Length of query: 750
Length of database: 5,994,473
Length adjustment: 101
Effective length of query: 649
Effective length of database: 3,812,065
Effective search space: 2474030185
Effective search space used: 2474030185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.9 bits)