RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
         (750 letters)



>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics,
           PSI-2, protein structure initiative; 2.40A
           {Agrobacterium tumefaciens str} (A:69-192)
          Length = 124

 Score =  116 bits (291), Expect = 1e-26
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 3/126 (2%)

Query: 16  SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
            K    VSK P V+ E  YYRE+I  + +ID+F  D RL++YALKA GL D ++A+ FI+
Sbjct: 1   GKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAFIR 60

Query: 76  KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV-IQSDIQHKTIIQDYKQSHQHKE 134
           K+L    SD  +  N+L+  +Y   A+S DF+        ++     +I +Y    Q  E
Sbjct: 61  KVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYA--RQTLE 118

Query: 135 EVALEE 140
           + A ++
Sbjct: 119 QEAGDD 124



 Score =  105 bits (265), Expect = 1e-23
 Identities = 24/113 (21%), Positives = 49/113 (43%)

Query: 133 KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLA 192
           K+     E++Y+R+ I  + S+D    D RL +Y L++  +     +  F++ VLT G +
Sbjct: 9   KQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAFIRKVLTEGAS 68

Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI 245
           +   +  +  DNR+  +A++  F   G+ +   +      I            
Sbjct: 69  DKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQEA 121



 Score =  101 bits (253), Expect = 4e-22
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
           S+E++S Q     ++  E +YY   I ++ S ++  A+ R+ N+ L++ G++     + F
Sbjct: 3   SLERVSKQP----DVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAF 58

Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
           + ++      D  +FAN   DNRY E+  S +F   G                      Y
Sbjct: 59  IRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA------ATATEAAKSGVIGNY 112

Query: 606 KHQMIEKKEEE 616
             Q +E++  +
Sbjct: 113 ARQTLEQEAGD 123



 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
            + Y+  +G +KSID+  +   +L              +AL A+ L      +  +R VL
Sbjct: 17  TEYYREKIGSVKSIDDFXADT-RL------------YNYALKAHGLEDXAYAKAFIRKVL 63

Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI 450
           T   SD +++ANK  D+R  +L  + +F   G+ 
Sbjct: 64  TEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA 97



 Score = 38.6 bits (90), Expect = 0.003
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 10/104 (9%)

Query: 250 IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP---- 305
           +  +  YY+  I SV S  DF  D +L+    L    L     A  F+  +         
Sbjct: 13  VARETEYYREKIGSVKSIDDFXADTRLYNYA-LKAHGLEDXAYAKAFIRKVLTEGASDKN 71

Query: 306 -IVSQVKYFFQINFHR----DNSSSTKIQQDSQIQKMLDLYKKN 344
              +++         +        +     ++    ++  Y + 
Sbjct: 72  AFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQ 115


>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics,
           PSI-2, protein structure initiative; 2.40A
           {Agrobacterium tumefaciens str} (A:1-68,A:193-323)
          Length = 199

 Score = 93.9 bits (233), Expect = 7e-20
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
           ++ +  + LALYF+R  P I++  + L D  L +V      L   FA     K+  +++K
Sbjct: 66  QDINNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEK 125

Query: 675 HIKINDFKDSKKVEDFL 691
            I I D +D +KV   L
Sbjct: 126 SINIKDLQDPEKVGKLL 142



 Score = 28.8 bits (64), Expect = 2.4
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 34  YYRERIKHISTIDEFIKDKRLFSYALKAFGLSD-MS------HAEKFIKKILESDLSDPK 86
           Y+  +   I +  +F+ D  L       F L D  +       A    K I   DL DP+
Sbjct: 77  YFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPE 136

Query: 87  SLVNQLNSLKYQYFARS 103
               ++  L  ++    
Sbjct: 137 ----KVGKLLERFTIXW 149


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 29.4 bits (66), Expect = 1.6
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 23/49 (46%)

Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY-NLNMQD-LDRD 410
           L  + SI++L+               ++   F    Y  + MQ  + RD
Sbjct: 2   LADVMSIESLVE--------------VV---F----YRGMTMQVAVPRD 29


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 29.1 bits (65), Expect = 2.2
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 16/55 (29%)

Query: 12 KDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEF---IKDKRLFSYALKAFG 63
          + ++ +     S+D     +  +  ER + I    E    ++       A + +G
Sbjct: 49 EALKLEAEEIPSED-----QNEFLLERTREIHN--EAESQLRA------AQQQWG 90


>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex,
           HSP90, heat shock protein, ATP-binding, heat shock,
           nucleotide-binding, acetylation; HET: ATP; 3.1A
           {Saccharomyces cerevisiae} (A:532-659)
          Length = 128

 Score = 26.9 bits (59), Expect = 8.2
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 611 EKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
            ++E+E      L    K          EILGD     VVS KL  +P      +     
Sbjct: 7   AEREKEIKEYEPLTKALK----------EILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 56

Query: 671 ILKKHIKINDFKDS 684
            +++ +K    +DS
Sbjct: 57  NMERIMKAQALRDS 70


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 5,475,158
Number of extensions: 256243
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 23
Length of query: 750
Length of database: 4,956,049
Length adjustment: 95
Effective length of query: 655
Effective length of database: 1,744,574
Effective search space: 1142695970
Effective search space used: 1142695970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)