RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
         (750 letters)



>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2,
           protein structure initiative; 2.40A {Agrobacterium
           tumefaciens str} SCOP: a.295.1.1
          Length = 323

 Score =  187 bits (475), Expect = 1e-47
 Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 22/276 (7%)

Query: 416 LTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRS 475
           L++ P  P S    S      K                   +S          Y + +  
Sbjct: 13  LSAMPPAPPSPQPVSH-----KQAATLCRQGRTCALKSGSNESG---GSVTSTYTSYRLI 64

Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
             D       S+E++S Q     ++  E +YY   I ++ S ++ +A+ R+ N+ L++ G
Sbjct: 65  SQDIGK----SLERVSKQP----DVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHG 116

Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
           ++     + F+ ++      D  +FAN   DNRY E+  S +F   G             
Sbjct: 117 LEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGA------AATATE 170

Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
                    Y  Q +E++  + +  + LALYF+R  P I++  + L D  L +V      
Sbjct: 171 AAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFN 230

Query: 656 LSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
           L   FA     K+  +++K I I D +D +KV   L
Sbjct: 231 LPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLL 266



 Score =  162 bits (411), Expect = 3e-40
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 18/218 (8%)

Query: 17  KLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKK 76
           K    VSK P V+ E  YYRE+I  + +ID+F+ D RL++YALKA GL DM++A+ FI+K
Sbjct: 70  KSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFIRK 129

Query: 77  ILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPP-KVIQSDIQHKTIIQDYKQSH----Q 131
           +L    SD  +  N+L+  +Y   A+S DF+        ++     +I +Y +       
Sbjct: 130 VLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQEA 189

Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD------ 185
             +   +  + YF +    I S      D  L      +F++   + +    K       
Sbjct: 190 GDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEK 249

Query: 186 -VLTLGLANPKK--YFIESRDNRFRAMAENFRFQPDGS 220
            +    L +P+K    +     RF  M E         
Sbjct: 250 SINIKDLQDPEKVGKLL----ERFTIMWEMQNPSTTYD 283



 Score =  104 bits (260), Expect = 8e-23
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 122 IIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
           I QD  +S +   K+     E++Y+R+ I  + S+D    D RL +Y L++  +     +
Sbjct: 64  ISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYA 123

Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
             F++ VLT G ++   +  +  DNR+  +A++  F   G+ +   +      I      
Sbjct: 124 KAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQ 183

Query: 240 YFNNTIDCV-PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
                       V    Y++    ++ S  DFL D  L ++ + + 
Sbjct: 184 TLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTF 229



 Score = 89.9 bits (223), Expect = 2e-18
 Identities = 40/210 (19%), Positives = 79/210 (37%), Gaps = 40/210 (19%)

Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
            + Y+  +G +KSID+ ++   +L              +AL A+ L      +  +R VL
Sbjct: 85  TEYYREKIGSVKSIDDFMADT-RL------------YNYALKAHGLEDMAYAKAFIRKVL 131

Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
           T   SD +++ANK  D+R  +L  + +F   G+        +       + +Y   ++++
Sbjct: 132 TEGASDKNAFANKLSDNRYAELAKSLDFAGLGA----AATATEAAKSGVIGNY--ARQTL 185

Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
                   N +       R+ L       Y+     TI S  + LA+  +      +  +
Sbjct: 186 EQEAGDDNNGV-------RLAL-------YFERKAPTIKSGLDFLADDALAQVFRTTFNL 231

Query: 537 DSQKVREDFL--CEIFK-----SDLKDPKS 559
                  D      + +      DL+DP+ 
Sbjct: 232 PDAFAAADVDKQAALIEKSINIKDLQDPEK 261



 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 34  YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS-------HAEKFIKKILESDLSDPK 86
           Y+  +   I +  +F+ D  L       F L D          A    K I   DL DP+
Sbjct: 201 YFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPE 260

Query: 87  SLVNQLNSLKYQYFARSYDFSPPP 110
            +   L      +  ++   +  P
Sbjct: 261 KVGKLLERFTIMWEMQNPSTTYDP 284


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 58.8 bits (142), Expect = 5e-09
 Identities = 101/676 (14%), Positives = 170/676 (25%), Gaps = 321/676 (47%)

Query: 2   IPSHVAPFPS-------KDIQSKLFSTVSKDPIVSCEE---RY--Y---RERIKHISTID 46
           +P+      S       K +        + D   +  E   ++  Y         +   D
Sbjct: 22  VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81

Query: 47  EFIKDKRLFSYALKAF-----GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFA 101
           + +         L  F       +D+ HA     K+L+ +     +LV     +K    A
Sbjct: 82  QVLN------LCLTEFENCYLEGNDI-HA--LAAKLLQEN---DTTLVKTKELIKNYITA 129

Query: 102 RSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFR---KNIHKINSV---- 154
           R     P  K   S                     AL     FR   +   ++ ++    
Sbjct: 130 RIMAKRPFDKKSNS---------------------AL-----FRAVGEGNAQLVAIFGGQ 163

Query: 155 ---DQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAE 211
              D  F++ R L      +           + D             I+         AE
Sbjct: 164 GNTDDYFEELRDL------YQTYH-----VLVGD------------LIKF-------SAE 193

Query: 212 NFRFQPDGSLSKRDKILTDMQIEKIVSNYFN-----NTIDCVPIVSDQNYYKLAINSVS- 265
                    L +     T +  EK+ +   N           P   D++Y  L   S+  
Sbjct: 194 TLS-----ELIR-----TTLDAEKVFTQGLNILEWLENPSNTP---DKDY--LL--SIPI 236

Query: 266 SFSDFLKDPKLFKMLQLSLFP-------LNP-E---------------ITA--------- 293
           S       P L  ++QL+ +          P E               +TA         
Sbjct: 237 SC------P-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289

Query: 294 DKFLTLMQENDPIVSQVKYFFQINF--HR---DNSSSTKIQQDS---------------- 332
           + F   ++        +   F I    +    + S    I +DS                
Sbjct: 290 ESFFVSVR------KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343

Query: 333 ----QIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNL-LSGKCQLEGPNSAE 387
               Q+Q  ++  K N   L   K        Q+ +  +    NL +SG           
Sbjct: 344 LTQEQVQDYVN--KTN-SHLPAGK--------QVEISLVNGAKNLVVSG----------- 381

Query: 388 EPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNAD 447
            P  +L      Y LN+       LR      PS  D                       
Sbjct: 382 -PPQSL------YGLNL------TLRKA--KAPSGLD----------------------- 403

Query: 448 GSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYY 507
                    QSR+        ++ RK       N+ F                       
Sbjct: 404 ---------QSRI-------PFSERKLKFS---NR-F----------------------- 420

Query: 508 TLNINT-IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK---SDLKDPKSFANT 563
            L + +  HS   LL                S  + +D +         D++ P  + +T
Sbjct: 421 -LPVASPFHS--HLLVPA-------------SDLINKDLVKNNVSFNAKDIQIP-VY-DT 462

Query: 564 Y--KDNR-YKE-IISS 575
           +   D R     I   
Sbjct: 463 FDGSDLRVLSGSISER 478



 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 60/384 (15%), Positives = 101/384 (26%), Gaps = 185/384 (48%)

Query: 8   PFPSKDIQSKLFSTVSKD--PIVS------CEERYYRERIKHI-STIDEFIKD------K 52
           PF  K   S LF  V +    +V+        + Y+ E ++ +  T    + D      +
Sbjct: 136 PFD-KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAE 193

Query: 53  RLFSYALKAFGLSDMSHAEKFIKKILE-------------SD--LSDPKSL----VNQL- 92
            L               AEK   + L               D  LS P S     V QL 
Sbjct: 194 TLSELI------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247

Query: 93  -----------------------------------------------NSLK--------- 96
                                                          +  K         
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307

Query: 97  ---YQYFARSYDFSPPPKVIQSDIQH---------------KTIIQDY-KQSHQHKEEVA 137
              Y+ +  +   S PP +++  +++               +  +QDY  +++ H     
Sbjct: 308 VRCYEAYPNT---SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH----- 359

Query: 138 LEESKYFRKNIHKINSVDQL-----------FKDRRL--------LDYVLQS---FS--- 172
           L   K  +  I  +N    L             +  L        LD   QS   FS   
Sbjct: 360 LPAGK--QVEISLVNGAKNLVVSGPPQSLYGL-NLTLRKAKAPSGLD---QSRIPFSERK 413

Query: 173 --ITPKY--ISLPF----LKDVLTLGLANPKKYFIESRDNRFRAM-----------AENF 213
              + ++  ++ PF    L     L   +     +   +  F A              + 
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKD-----LVKNNVSFNAKDIQIPVYDTFDGSDL 468

Query: 214 RFQPDGSLSKRDKILTDMQIEKIV 237
           R    GS+S+R   + D  I   V
Sbjct: 469 R-VLSGSISER---IVDCIIRLPV 488



 Score = 39.9 bits (93), Expect = 0.002
 Identities = 46/342 (13%), Positives = 84/342 (24%), Gaps = 137/342 (40%)

Query: 344 NCQILHDDKMQSLIKDYQLPLG--KIKSIDNLLSG-------KCQLEGPNSAEEPIITLQ 394
               L +   + L +  +      +  +   L+           +       ++    L 
Sbjct: 29  IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---VLN 85

Query: 395 FALDAYNLNMQDLDRDQLRN-----VLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
             L  +           L       +      + D+   K+K   LIK        A   
Sbjct: 86  LCLTEFE-------NCYLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRP 136

Query: 450 IGPIPMMQSRL---TIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDY 506
                   S L       N +  A     I       F        Q       N++ DY
Sbjct: 137 FDKKS--NSALFRAVGEGNAQLVA-----I-------FGG------QG------NTD-DY 169

Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
                     FEEL                     R+     ++            TY  
Sbjct: 170 ----------FEEL---------------------RD-----LY-----------QTYHV 182

Query: 567 NRYKEIISS----FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQM-IEK--KEEEKDP 619
               ++I       +     EL        +      D   ++   + I +  +     P
Sbjct: 183 L-VGDLIKFSAETLS-----ELI-------RTT---LDAEKVFTQGLNILEWLENPSNTP 226

Query: 620 NIA-LALYFKRTIPNIRNHYEILGDSKL--FKVVSKKLKLSP 658
           +   L      +IP I     ++G  +L  + V +K L  +P
Sbjct: 227 DKDYLL-----SIP-IS--CPLIGVIQLAHYVVTAKLLGFTP 260



 Score = 38.0 bits (88), Expect = 0.007
 Identities = 21/154 (13%), Positives = 39/154 (25%), Gaps = 57/154 (37%)

Query: 516 SFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS 575
           +  EL+   + L ++            +  L       L +   F N Y +         
Sbjct: 56  TPAELVG--KFLGYVSSLVEPSKVGQFDQVL----NLCLTE---FENCYLEGN------- 99

Query: 576 FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFK------R 629
              DIH   +             ++   L K + +            +  Y        R
Sbjct: 100 ---DIHALAAK---------LLQENDTTLVKTKEL------------IKNYITARIMAKR 135

Query: 630 TIPNIRNHYEILGDSKLFK-VVSKKLKLSPYFAV 662
                        +S LF+ V     +L    A+
Sbjct: 136 PFDKKS-------NSALFRAVGEGNAQL---VAI 159



 Score = 28.4 bits (63), Expect = 6.3
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 33/115 (28%)

Query: 474  RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
            ++  D  N++ N  +       +++ IN+ V+       TIH   E              
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------TIHFGGE-------------- 1679

Query: 534  KGIDSQKVREDFLCEIFKS----DLKDPKSF------ANTYKDNRYKEIISSFNF 578
            KG   +++RE++   IF++     LK  K F      + +Y     K ++S+  F
Sbjct: 1680 KG---KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731


>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral
           virus; HET: MYR SPH; 2.80A {Human poliovirus 1 mahoney}
           SCOP: b.121.4.1
          Length = 340

 Score = 31.0 bits (70), Expect = 0.97
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 21/84 (25%)

Query: 236 IVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDP----KLFKMLQLSLFPLNPEI 291
              NY              NYY+ + ++ +S  DF +DP    +  K + +   P+    
Sbjct: 22  STINYTT-----------INYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLNSP 70

Query: 292 TA------DKFLTLMQENDPIVSQ 309
                   D+ L L   N  I +Q
Sbjct: 71  NIEACGYSDRVLQLTLGNSTITTQ 94


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 8/31 (25%)

Query: 329 QQDSQIQKMLDLYKKNCQILHDDKMQSL-IK 358
           Q   ++Q  L LY        DD   +L IK
Sbjct: 20  QALKKLQASLKLYA-------DDSAPALAIK 43



 Score = 28.0 bits (61), Expect = 6.9
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 6/34 (17%)

Query: 86  KSLVNQLN-SLKYQYFARSYDFSPPPKVIQSDIQ 118
           K  + +L  SLK   +A   D S P   I++ ++
Sbjct: 19  KQALKKLQASLKL--YA---DDSAPALAIKATME 47


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.1 bits (64), Expect = 3.6
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 185 DVLTLGLANPKKYFIESR------DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVS 238
           D LT    + +K+  E R      D   + M + +R +    L + ++  ++ Q+EK   
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-QVEK--- 133

Query: 239 NYFNNTIDCVPIVSDQNYYK 258
           N  NN I      +D+ +Y+
Sbjct: 134 NKINNRI------ADKAFYQ 147


>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
           helical reconstruction, structural protein; 4.00A
           {Salmonella typhimurium} SCOP: e.32.1.1
          Length = 494

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 5/24 (20%), Positives = 16/24 (66%)

Query: 474 RSIHDAENKSFNSMEQISTQKRIN 497
            +++ +++    ++E++S+  RIN
Sbjct: 15  NNLNKSQSALGTAIERLSSGLRIN 38


>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
           flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
          Length = 326

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 485 NSMEQISTQKRIN 497
            S++++S+  RIN
Sbjct: 7   TSLQRLSSGLRIN 19


>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale}
          Length = 266

 Score = 28.1 bits (62), Expect = 6.4
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 251 VSDQNYYKLAIN----SVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEN--- 303
           ++ +NYY    N    SVS + DF             +  LN     +K   L+  +   
Sbjct: 4   LTSENYYSQEANKEYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVD 63

Query: 304 DPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQI 347
                 +  F + N               Q ++++   +++   
Sbjct: 64  SYFEGSLDQFKKDNPEIFTQKGELKANFKQAEEIIARIERDEYF 107


>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
           structural genomics, translation, NPPSFA; 2.42A {Aquifex
           aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
          Length = 317

 Score = 28.0 bits (61), Expect = 7.9
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 579 DIHGELSHKKIGKVQDNFHIDDTCDLYKHQM-IEKKEEEKDPNIALALYFKRTIPNIRNH 637
           +I      K +  V+D  + + +    + +  +  + +  + N+     F + +  +R  
Sbjct: 176 EIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINENLEDT--FLKMVKVLRAE 233

Query: 638 YEILGD--SKLFKVVSKKLKLS-PYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAA 694
            E L +   KL+K V K   L        P   + R+++K I   D++  + V   L   
Sbjct: 234 REFLEEEAQKLYKEVKKGNCLDVKKLKEKPLALQRRVIRKFIGEKDYEKVELVRSLLEKG 293

Query: 695 KAMD 698
             ++
Sbjct: 294 GEVN 297


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,335,005
Number of extensions: 307023
Number of successful extensions: 891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 48
Length of query: 750
Length of database: 5,693,230
Length adjustment: 100
Effective length of query: 650
Effective length of database: 3,268,830
Effective search space: 2124739500
Effective search space used: 2124739500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)