RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
         (750 letters)



>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 225

 Score =  179 bits (456), Expect = 7e-46
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
           S+E++S Q     ++  E +YY   I ++ S ++ +A+ R+ N+ L++ G++     + F
Sbjct: 18  SLERVSKQP----DVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAF 73

Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
           + ++      D  +FAN   DNRY E+  S +F   G                      Y
Sbjct: 74  IRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA------ATATEAAKSGVIGNY 127

Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
             Q +E++  + +  + LALYF+R  P I++  + L D  L +V      L   FA    
Sbjct: 128 ARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADV 187

Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
            K+  +++K I I D +D +KV   L
Sbjct: 188 DKQAALIEKSINIKDLQDPEKVGKLL 213



 Score =  150 bits (381), Expect = 3e-37
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 15  QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
             K    VSK P V+ E  YYRE+I  + +ID+F+ D RL++YALKA GL DM++A+ FI
Sbjct: 15  IGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFI 74

Query: 75  KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQHKTIIQDYKQSH--- 130
           +K+L    SD  +  N+L+  +Y   A+S DF+        ++     +I +Y +     
Sbjct: 75  RKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQ 134

Query: 131 -QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLP-------F 182
               +   +  + YF +    I S      D  L      +F++   + +          
Sbjct: 135 EAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALI 194

Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAE 211
            K +    L +P+K  +     RF  M E
Sbjct: 195 EKSINIKDLQDPEK--VGKLLERFTIMWE 221



 Score =  102 bits (255), Expect = 1e-22
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 122 IIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
           I QD  +S +   K+     E++Y+R+ I  + S+D    D RL +Y L++  +     +
Sbjct: 11  ISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYA 70

Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
             F++ VLT G ++   +  +  DNR+  +A++  F   G+ +   +      I      
Sbjct: 71  KAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQ 130

Query: 240 YFNNTIDCV-PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
                       V    Y++    ++ S  DFL D  L ++ + + 
Sbjct: 131 TLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTF 176



 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%)

Query: 354 QSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLR 413
               + Y+  +G +KSID+ ++   +L              +AL A+ L      +  +R
Sbjct: 29  ARETEYYREKIGSVKSIDDFMADT-RL------------YNYALKAHGLEDMAYAKAFIR 75

Query: 414 NVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRK 473
            VLT   SD +++ANK  D+R  +L  + +F   G+        +       + +Y   +
Sbjct: 76  KVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGA----AATATEAAKSGVIGNY--AR 129

Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
           +++        N +       R+ L       Y+     TI S  + LA+  +      +
Sbjct: 130 QTLEQEAGDDNNGV-------RLAL-------YFERKAPTIKSGLDFLADDALAQVFRTT 175

Query: 534 KGIDSQKVREDFL--CEIFK-----SDLKDPKS 559
             +       D      + +      DL+DP+ 
Sbjct: 176 FNLPDAFAAADVDKQAALIEKSINIKDLQDPEK 208


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
           coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 36.7 bits (85), Expect = 0.007
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN-PEITADKFL 297
           +Y N            NYYK A ++ ++  DF +DP  F      +   + P + +D+  
Sbjct: 25  HYTN-----------INYYKDAASNSANRQDFTQDPSKFTEPVKDVMIKSLPALNSDRVR 73

Query: 298 TLMQENDPIVSQ 309
           ++   N  I +Q
Sbjct: 74  SITLGNSTITTQ 85


>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine
           enterovirus, VG-5-27 [TaxId: 12064]}
          Length = 284

 Score = 34.5 bits (79), Expect = 0.035
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT-ADKFL 297
           NY N            NYY  A ++  +  DF +DP  F   Q     +      +D+  
Sbjct: 4   NYNNI-----------NYYSHAASAAQNKQDFTQDPSKFT--QPIADVIKEACGYSDRVA 50

Query: 298 TLMQENDPIVSQ 309
            L   N  I +Q
Sbjct: 51  QLTLGNSTITTQ 62


>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
           3, strain Sabin [TaxId: 12086]}
          Length = 334

 Score = 33.3 bits (76), Expect = 0.077
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 16/79 (20%)

Query: 236 IVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF-----PLNPE 290
              NY              NYYK + ++ +S  D+ +DP  F      +       LN  
Sbjct: 22  STINYTT-----------INYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALNAC 70

Query: 291 ITADKFLTLMQENDPIVSQ 309
             +D+ L L   N  I +Q
Sbjct: 71  GYSDRVLQLTLGNSTITTQ 89


>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
           rhinovirus B 14 (HRV-14) [TaxId: 12131]}
          Length = 295

 Score = 30.2 bits (68), Expect = 0.58
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 255 NYYKLAINSVSSFSDFLKDPKLF-----KMLQLSLFPLNPEITADKFLTLMQENDPIVSQ 309
           NYYK A ++ S+      DP  F      ++      LN    +D+   +   N  I +Q
Sbjct: 2   NYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALNG--YSDRVQQITLGNSTITTQ 59


>d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 124

 Score = 29.0 bits (65), Expect = 1.4
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
            R +E +S ++FD        + G  +    ++        Q+++  +E +  ++ + L 
Sbjct: 4   KREQEFVSQYHFDARNFEWENENGAPETKVDVNF-------QLLQHDQENQVTSLIVILS 56

Query: 627 F 627
           F
Sbjct: 57  F 57


>d2o2aa1 d.33.1.2 (A:1-124) Hypothetical protein gbs1413
           {Streptococcus agalactiae [TaxId: 1311]}
          Length = 124

 Score = 27.1 bits (60), Expect = 5.0
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
            R +E ++ +++D       ++ G  + NF +         Q+  + E  K  +I   L 
Sbjct: 4   IREQEFVNQYHYDARNLEWEEENGTPKTNFEVT-------FQLANRDEAAKVTSIVAVLQ 56

Query: 627 F 627
           F
Sbjct: 57  F 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,766,392
Number of extensions: 136507
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 23
Length of query: 750
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 658
Effective length of database: 1,144,436
Effective search space: 753038888
Effective search space used: 753038888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)