RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] (750 letters) >d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p {Agrobacterium tumefaciens [TaxId: 358]} Length = 225 Score = 179 bits (456), Expect = 7e-46 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 10/206 (4%) Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545 S+E++S Q ++ E +YY I ++ S ++ +A+ R+ N+ L++ G++ + F Sbjct: 18 SLERVSKQP----DVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAF 73 Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605 + ++ D +FAN DNRY E+ S +F G Y Sbjct: 74 IRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA------ATATEAAKSGVIGNY 127 Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665 Q +E++ + + + LALYF+R P I++ + L D L +V L FA Sbjct: 128 ARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADV 187 Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691 K+ +++K I I D +D +KV L Sbjct: 188 DKQAALIEKSINIKDLQDPEKVGKLL 213 Score = 150 bits (381), Expect = 3e-37 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74 K VSK P V+ E YYRE+I + +ID+F+ D RL++YALKA GL DM++A+ FI Sbjct: 15 IGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFI 74 Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQHKTIIQDYKQSH--- 130 +K+L SD + N+L+ +Y A+S DF+ ++ +I +Y + Sbjct: 75 RKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQ 134 Query: 131 -QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLP-------F 182 + + + YF + I S D L +F++ + + Sbjct: 135 EAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALI 194 Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAE 211 K + L +P+K + RF M E Sbjct: 195 EKSINIKDLQDPEK--VGKLLERFTIMWE 221 Score = 102 bits (255), Expect = 1e-22 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 122 IIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179 I QD +S + K+ E++Y+R+ I + S+D D RL +Y L++ + + Sbjct: 11 ISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYA 70 Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239 F++ VLT G ++ + + DNR+ +A++ F G+ + + I Sbjct: 71 KAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQ 130 Query: 240 YFNNTIDCV-PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284 V Y++ ++ S DFL D L ++ + + Sbjct: 131 TLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTF 176 Score = 87.2 bits (216), Expect = 5e-18 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%) Query: 354 QSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLR 413 + Y+ +G +KSID+ ++ +L +AL A+ L + +R Sbjct: 29 ARETEYYREKIGSVKSIDDFMADT-RL------------YNYALKAHGLEDMAYAKAFIR 75 Query: 414 NVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRK 473 VLT SD +++ANK D+R +L + +F G+ + + +Y + Sbjct: 76 KVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGA----AATATEAAKSGVIGNY--AR 129 Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533 +++ N + R+ L Y+ TI S + LA+ + + Sbjct: 130 QTLEQEAGDDNNGV-------RLAL-------YFERKAPTIKSGLDFLADDALAQVFRTT 175 Query: 534 KGIDSQKVREDFL--CEIFK-----SDLKDPKS 559 + D + + DL+DP+ Sbjct: 176 FNLPDAFAAADVDKQAALIEKSINIKDLQDPEK 208 >g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]} Length = 320 Score = 36.7 bits (85), Expect = 0.007 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 12/72 (16%) Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN-PEITADKFL 297 +Y N NYYK A ++ ++ DF +DP F + + P + +D+ Sbjct: 25 HYTN-----------INYYKDAASNSANRQDFTQDPSKFTEPVKDVMIKSLPALNSDRVR 73 Query: 298 TLMQENDPIVSQ 309 ++ N I +Q Sbjct: 74 SITLGNSTITTQ 85 >g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]} Length = 284 Score = 34.5 bits (79), Expect = 0.035 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 14/72 (19%) Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT-ADKFL 297 NY N NYY A ++ + DF +DP F Q + +D+ Sbjct: 4 NYNNI-----------NYYSHAASAAQNKQDFTQDPSKFT--QPIADVIKEACGYSDRVA 50 Query: 298 TLMQENDPIVSQ 309 L N I +Q Sbjct: 51 QLTLGNSTITTQ 62 >g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]} Length = 334 Score = 33.3 bits (76), Expect = 0.077 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 16/79 (20%) Query: 236 IVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF-----PLNPE 290 NY NYYK + ++ +S D+ +DP F + LN Sbjct: 22 STINYTT-----------INYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALNAC 70 Query: 291 ITADKFLTLMQENDPIVSQ 309 +D+ L L N I +Q Sbjct: 71 GYSDRVLQLTLGNSTITTQ 89 >g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]} Length = 295 Score = 30.2 bits (68), Expect = 0.58 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 255 NYYKLAINSVSSFSDFLKDPKLF-----KMLQLSLFPLNPEITADKFLTLMQENDPIVSQ 309 NYYK A ++ S+ DP F ++ LN +D+ + N I +Q Sbjct: 2 NYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALNG--YSDRVQQITLGNSTITTQ 59 >d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558 {Streptococcus pneumoniae [TaxId: 1313]} Length = 124 Score = 29.0 bits (65), Expect = 1.4 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626 R +E +S ++FD + G + ++ Q+++ +E + ++ + L Sbjct: 4 KREQEFVSQYHFDARNFEWENENGAPETKVDVNF-------QLLQHDQENQVTSLIVILS 56 Query: 627 F 627 F Sbjct: 57 F 57 >d2o2aa1 d.33.1.2 (A:1-124) Hypothetical protein gbs1413 {Streptococcus agalactiae [TaxId: 1311]} Length = 124 Score = 27.1 bits (60), Expect = 5.0 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626 R +E ++ +++D ++ G + NF + Q+ + E K +I L Sbjct: 4 IREQEFVNQYHYDARNLEWEEENGTPKTNFEVT-------FQLANRDEAAKVTSIVAVLQ 56 Query: 627 F 627 F Sbjct: 57 F 57 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,766,392 Number of extensions: 136507 Number of successful extensions: 351 Number of sequences better than 10.0: 1 Number of HSP's gapped: 343 Number of HSP's successfully gapped: 23 Length of query: 750 Length of database: 2,407,596 Length adjustment: 92 Effective length of query: 658 Effective length of database: 1,144,436 Effective search space: 753038888 Effective search space used: 753038888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.5 bits)