BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] (750 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] Length = 750 Score = 1515 bits (3923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 750/750 (100%), Positives = 750/750 (100%) Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK Sbjct: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60 Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK Sbjct: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120 Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL Sbjct: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180 Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY Sbjct: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240 Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM Sbjct: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300 Query: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY Sbjct: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360 Query: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP Sbjct: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420 Query: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE Sbjct: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480 Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK Sbjct: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540 Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD Sbjct: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600 Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF Sbjct: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660 Query: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN Sbjct: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720 Query: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF Sbjct: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750 >gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62] Length = 78 Score = 25.4 bits (54), Expect = 3.2, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 141 SKYFRKNIHKINSVDQ--LFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANP 194 S ++ + SVDQ L ++ L Y+L + P PFL D LGL +P Sbjct: 22 SGFYAIRFSLLRSVDQSLLPPWQQFLFYLLPVAVLVPFISFFPFLIDAFALGLQDP 77 >gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 23.9 bits (50), Expect = 9.4, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 549 IFKSDLKDPKSFAN--TYKDNRYKEIISSFNFDIHG 582 + D+KDP Y D R +E+ S +FD+ G Sbjct: 28 VIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDG 63 >gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 702 Score = 23.9 bits (50), Expect = 9.9, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579 LL+ KRI L I+ +K RE L+ + + R +IS F Sbjct: 590 LLSAKRIFQIL----AIEEKKNRE--------ISLEISPQYLLLEAEKRLYAVISDFGTH 637 Query: 580 IHGELSHKKIGKVQDNFH-IDDTCDLYKHQMIEKKE--EEKDPNIALALYFKRTIPNIRN 636 I + HK+ ++ D H I + +++ Q++ + E +D ++L Y K I + N Sbjct: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 Query: 637 HYEIL 641 +I+ Sbjct: 698 VQKIV 702 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 500,652 Number of Sequences: 1233 Number of extensions: 22114 Number of successful extensions: 95 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 14 length of query: 750 length of database: 328,796 effective HSP length: 81 effective length of query: 669 effective length of database: 228,923 effective search space: 153149487 effective search space used: 153149487 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)