RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781010|ref|YP_003065423.1| hypothetical protein
CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>2qne_A Putative methyltransferase; ZP_00558420.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 2.30A {Desulfitobacterium hafniense Y51}
           (A:114-181,A:366-471)
          Length = 174

 Score = 30.0 bits (68), Expect = 0.22
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 148 QASEIDIAIENLPD-----HQVDRNHTLSNLRGACYQPSLVSNSSLKLWD 192
              E   A + +       H + + HT  N +   Y P+L   S+   W 
Sbjct: 101 TFDEDGXAFDVIEKVGPGGHFLTQKHTRKNHKREFYTPTLSDRSAYDTWA 150


>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine
           ladder, asparagine ladder, virulence factor, solenoid,
           cell WALL; 2.70A {Listeria monocytogenes} (A:)
          Length = 457

 Score = 29.5 bits (64), Expect = 0.30
 Identities = 2/41 (4%), Positives = 11/41 (26%), Gaps = 1/41 (2%)

Query: 104 NLNPNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDLK 144
            +   + +++           ++      +    E    +K
Sbjct: 418 TITWENLSTDNPAVTYTF-TSENGAIVGTVTTPFEAPQPIK 457


>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
           A kinase, structural genomics, joint center for
           structural genomics, JCSG; HET: ADP COD; 2.60A
           {Thermotoga maritima} (A:1-43,A:110-192)
          Length = 126

 Score = 28.6 bits (64), Expect = 0.52
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 60  KTEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVA 102
           +T +KR+     RL  +E         V+ N +   ++E +V 
Sbjct: 75  ETILKRNREADRRLKFQEDIVPQG--IVVANNSTLEDLEKKVE 115


>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich
           repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis
           thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
           3c6o_B* 3c6p_B* (B:46-594)
          Length = 549

 Score = 28.4 bits (61), Expect = 0.73
 Identities = 5/51 (9%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 123 DLKSNHQASEIDIAIENLP-----DLKSNHQASEIDIAIENLPDHQVDRNH 168
            + +   A      I   P     +LK     ++ ++  +    +      
Sbjct: 4   FIGNC-YAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 53


>2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2,
           TLR1, lipopeptide, innate immunity, glycoprotein, immune
           response, inflammatory response, leucine-rich repeat,
           membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
           (B:1-484)
          Length = 484

 Score = 26.9 bits (57), Expect = 1.7
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 20/55 (36%)

Query: 123 DLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGAC 177
           ++ SN   S  D   + L  L+      +I +            N        +C
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQ------KIWL----------HTN----PWDCSC 484


>1uf9_A TT1252 protein; P-loop, nucleotide binding domain,
           structural genomics, riken structural
           genomics/proteomics initiative, RSGI; HET: ATP; 2.80A
           {Thermus thermophilus} (A:1-38,A:106-203)
          Length = 136

 Score = 26.3 bits (58), Expect = 2.5
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 47  IQENNKPRNMTIFKTEVKRDIRRASRLSLEEKSKNADKPTVIENQAD 93
           ++       ++  + EV    R  ++   EEK K A    V+EN   
Sbjct: 72  VRRVXARSGLS--REEVLA--RERAQXPEEEKRKRAT--WVLENTGS 112


>1o6v_A Internalin A; bacterial infection, extracellular
           recognition, cell WALL attached, leucine rich repeat;
           1.5A {Listeria monocytogenes} (A:46-466)
          Length = 421

 Score = 26.4 bits (56), Expect = 2.6
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 119 ENLPDLKSNHQASEIDIAIENLPDLK----SNHQASEIDIAIENLPDHQ 163
           + +  L+++    +    +E L +L     SN+Q ++I   ++NL    
Sbjct: 1   DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLV 48


>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP;
           1.80A {Saccharomyces cerevisiae} (A:272-418)
          Length = 147

 Score = 25.8 bits (56), Expect = 3.9
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 80  KNADKPTVIENQADNINIEVEVA 102
             A K  +     + IN   EVA
Sbjct: 3   DGAAKSDIPTILYERINNRWEVA 25


>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA,
          KH domain, structural genomics, NPPSFA; 1.84A {Thermus
          thermophilus HB8} (A:)
          Length = 95

 Score = 25.8 bits (57), Expect = 4.0
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 35 IGNTIKKSINRVIQENNKPR--NMTIFKTEVKRDIRRA 70
          +   +K+++   IQ    PR   +T+    + +D    
Sbjct: 8  LEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVL 45


>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
           signaling protein; HET: NAG FLC; 3.40A {Bos taurus} (A:)
          Length = 332

 Score = 25.6 bits (54), Expect = 4.1
 Identities = 5/29 (17%), Positives = 7/29 (24%)

Query: 117 AIENLPDLKSNHQASEIDIAIENLPDLKS 145
               +PDL S                L+ 
Sbjct: 9   TTSGIPDLDSLPPTYSAMCPFGCHCHLRV 37


>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
           inhibitor complex, structural genomics, protein
           structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
           sapiens} (W:)
          Length = 461

 Score = 25.3 bits (53), Expect = 5.6
 Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 5/48 (10%)

Query: 104 NLNPNHQASEIDIAIENLP-----DLKSNHQASEIDIAIENLPDLKSN 146
            L        ++   +         L   + + E++  ++ L   K +
Sbjct: 409 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 456


>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger
           esential for function;...; stable, non-interacting
           alpha-helices; NMR {Saccharomyces cerevisiae} (A:)
          Length = 81

 Score = 24.7 bits (54), Expect = 7.5
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 66  DIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIENLPDLK 125
            IR+A  LSL+E   +A    ++                    ++    +I  E  PDLK
Sbjct: 14  LIRKAIELSLKESRNSASSEPIVPVVE--------------SKNEVKRQEIEEEEDPDLK 59

Query: 126 SNHQAS 131
           +  Q S
Sbjct: 60  AAIQES 65


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (A:550-614)
          Length = 65

 Score = 24.7 bits (53), Expect = 9.4
 Identities = 3/6 (50%), Positives = 6/6 (100%)

Query: 96  NIEVEV 101
           N+EV++
Sbjct: 1   NVEVKI 6


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.312    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,259,214
Number of extensions: 51143
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 23
Length of query: 195
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 111
Effective length of database: 2,116,429
Effective search space: 234923619
Effective search space used: 234923619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)