RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781010|ref|YP_003065423.1| hypothetical protein
CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)



>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomics,
           joint center for structural genomics, JCSG; HET: MSE;
           2.30A {Desulfitobacterium hafniense Y51}
          Length = 495

 Score = 29.5 bits (66), Expect = 0.59
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 127 NHQASEIDIAI-ENLPDLKSNHQASEIDIAIENLPD-----HQVDRNHTLSNLRGACYQP 180
           +++   +D  I   L      +   E  +A + +       H + + HT  N +   Y P
Sbjct: 376 SYEKFIMDDEIAGMLLHYMKGYTFDEDGMAFDVIEKVGPGGHFLTQKHTRKNHKREFYTP 435

Query: 181 SLVSNSSLKLW 191
           +L   S+   W
Sbjct: 436 TLSDRSAYDTW 446


>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A
           kinase, structural genomics, joint center for structural
           genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga
           maritima}
          Length = 192

 Score = 28.3 bits (62), Expect = 1.2
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 60  KTEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEV 101
           +T +KR+     RL  +E         V+ N +   ++E +V
Sbjct: 141 ETILKRNREADRRLKFQEDIVPQG--IVVANNSTLEDLEKKV 180


>2bih_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
           nitrate assimilation, oxidoreductase; HET: MTV; 2.60A
           {Pichia angusta}
          Length = 474

 Score = 27.4 bits (60), Expect = 2.2
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 137 IENLP-DLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRG 175
           I  LP  ++ +   +E+        D+ V R+  L  L G
Sbjct: 12  ITELPFPVRQDSPLTEVLPTDLKTKDNFVARDPDLLRLTG 51


>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH
          domain, structural genomics, NPPSFA; 1.84A {Thermus
          thermophilus HB8} SCOP: d.52.7.1 PDB: 2r1c_A
          Length = 95

 Score = 25.1 bits (55), Expect = 9.2
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 35 IGNTIKKSINRVIQENNKPR--NMTIFKTEVKRDIRRA 70
          +   +K+++   IQ    PR   +T+    + +D    
Sbjct: 8  LEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVL 45


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.312    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,474,539
Number of extensions: 62254
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 20
Length of query: 195
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 108
Effective length of database: 3,584,002
Effective search space: 387072216
Effective search space used: 387072216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.0 bits)