HHsearch results for GI: 254781011 and protein with PDBid: 1ufr_A
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=98.61 E-value=1.8e-07 Score=68.25 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC------CCCEEEEECCCCCCHH-----HH
Q ss_conf 213579899999999999986642175666789982231257889998515------8717876315642011-----00
Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQ-----KS 117 (228)
Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l------~~p~~~vRK~~K~hG~-----~~ 117 (228)
+.+++..+..+.|.. ++..|.+.....++.+++|+..||+++|+.+...+ ..|+.++.-....++. +.
T Consensus 5 ~~l~s~~eI~~~I~r-lA~qI~e~~~g~~~~vligi~~Gg~~fa~~L~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 83 (181)
T 1ufr_A 5 AELMNAPEMRRALYR-IAHEIVEANKGTEGLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGVLDITLYRDDLTEIGYRP 83 (181)
T ss_dssp EEEEEHHHHHHHHHH-HHHHHHHHHTSSTTEEEEEETTTHHHHHHHHHHHHHHHHCSCCCEEEEEEEC-----------C
T ss_pred EEECCHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 498899999999999-9999999669998889999606289999999998775328986358898888636444478752
Q ss_pred HHH----HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC
Q ss_conf 133----103733414408788732236999999998659-8785688887417
Q gi|254781011|r 118 QIE----GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD 166 (228)
Q Consensus 118 ~iE----G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~ 166 (228)
.+. ....+|++||||||++-||.|+..+++.+.+.| ..++-+++++++.
T Consensus 84 ~~~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~l~~~g~~~~v~~avL~kk~ 137 (181)
T 1ufr_A 84 QVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAVLVDRG 137 (181)
T ss_dssp EEEEEEECSCCTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECC
T ss_pred EEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 441356776656856999842026560699999999873999569999997387