HHsearch results for GI: 254781011 and protein with PDBid: 1wd5_A

>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.05  E-value=2.4e-10  Score=86.92  Aligned_cols=123  Identities=21%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC------CCH------H-----------
Q ss_conf             9999999866421756667899822312578899985158717--87631564------201------1-----------
Q gi|254781011|r   61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK------KHG------Q-----------  115 (228)
Q Consensus        61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K------~hG------~-----------  115 (228)
                      ....+++.+.+..  .+.++|++++.||+|+|..+|..++.|+  +++||-.-      ..|      .           
T Consensus         9 aG~~LA~~l~~~~--~~~~vVl~ip~Ggv~~a~~iA~~l~~~~d~~~~~ki~~p~~~e~~~gavs~~~~~~~~~~~~~~~   86 (208)
T 1wd5_A            9 AGALLAEALAPLG--LEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYALRYA   86 (208)
T ss_dssp             HHHHHHHHHGGGC--CCSCEEEECTTHHHHHHHHHHHHHTCEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHHHHS
T ss_pred             HHHHHHHHHHHHC--CCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCEEECCCCEEEECHHHHHC
T ss_conf             9999999999618--99879991798764999999998512101466750247887101133075599779710364305


Q ss_pred             -------------------HHHHHH----CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH
Q ss_conf             -------------------001331----037334144087887322369999999986598785688887417632489
Q gi|254781011|r  116 -------------------KSQIEG----HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP  172 (228)
Q Consensus       116 -------------------~~~iEG----~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~  172 (228)
                                         .....+    .-.+|++|+||||+++||.|+..+++.|+++|+.-+-+++.+.   .+.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a~pv~---~~~~~  163 (208)
T 1wd5_A           87 DQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVA---SPEAV  163 (208)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEEEEB---CHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC---CHHHH
T ss_conf             815665788889999998764640258974557878999715133589999999999976999899999856---87788


Q ss_pred             HHHHHCCCEEEEECCHH
Q ss_conf             99997798099963299
Q gi|254781011|r  173 ARFRENNIKLHYLATWN  189 (228)
Q Consensus       173 ~~l~~~gi~~~sl~t~~  189 (228)
                      +.++.. ..+..+..-+
T Consensus       164 ~~l~~~-~D~v~~~~p~  179 (208)
T 1wd5_A          164 ERLKAR-AEVVALSVPQ  179 (208)
T ss_dssp             HHHHTT-SEEEEEECCT
T ss_pred             HHCCCC-CCEEEECCCC
T ss_conf             751667-9989985783