HHsearch results for GI: 254781011 and protein with PDBid: 1wd5_A
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.05 E-value=2.4e-10 Score=86.92 Aligned_cols=123 Identities=21% Similarity=0.183 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC------CCH------H-----------
Q ss_conf 9999999866421756667899822312578899985158717--87631564------201------1-----------
Q gi|254781011|r 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK------KHG------Q----------- 115 (228)
Q Consensus 61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K------~hG------~----------- 115 (228)
....+++.+.+.. .+.++|++++.||+|+|..+|..++.|+ +++||-.- ..| .
T Consensus 9 aG~~LA~~l~~~~--~~~~vVl~ip~Ggv~~a~~iA~~l~~~~d~~~~~ki~~p~~~e~~~gavs~~~~~~~~~~~~~~~ 86 (208)
T 1wd5_A 9 AGALLAEALAPLG--LEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYALRYA 86 (208)
T ss_dssp HHHHHHHHHGGGC--CCSCEEEECTTHHHHHHHHHHHHHTCEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHHHHS
T ss_pred HHHHHHHHHHHHC--CCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCEEECCCCEEEECHHHHHC
T ss_conf 9999999999618--99879991798764999999998512101466750247887101133075599779710364305
Q ss_pred -------------------HHHHHH----CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH
Q ss_conf -------------------001331----037334144087887322369999999986598785688887417632489
Q gi|254781011|r 116 -------------------KSQIEG----HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP 172 (228)
Q Consensus 116 -------------------~~~iEG----~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~ 172 (228)
.....+ .-.+|++|+||||+++||.|+..+++.|+++|+.-+-+++.+. .+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a~pv~---~~~~~ 163 (208)
T 1wd5_A 87 DQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVA---SPEAV 163 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEEEEB---CHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC---CHHHH
T ss_conf 815665788889999998764640258974557878999715133589999999999976999899999856---87788
Q ss_pred HHHHHCCCEEEEECCHH
Q ss_conf 99997798099963299
Q gi|254781011|r 173 ARFRENNIKLHYLATWN 189 (228)
Q Consensus 173 ~~l~~~gi~~~sl~t~~ 189 (228)
+.++.. ..+..+..-+
T Consensus 164 ~~l~~~-~D~v~~~~p~ 179 (208)
T 1wd5_A 164 ERLKAR-AEVVALSVPQ 179 (208)
T ss_dssp HHHHTT-SEEEEEECCT
T ss_pred HHCCCC-CCEEEECCCC
T ss_conf 751667-9989985783