RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (228 letters) >3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, magnesium, pyrimidine biosynthesis; 2.40A {Streptococcus mutans} Length = 243 Score = 189 bits (480), Expect = 7e-49 Identities = 69/209 (33%), Positives = 124/209 (59%), Gaps = 3/209 (1%) Query: 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71 +A+ +A+ L +IKAV PE P+ SGI SP+Y D R +S+ R++I + +T+ Sbjct: 37 LAKDIARDLLDIKAVYLKPEEPFTWASGIKSPIYTDNRITLSYPETRTLIENGFVETIKE 96 Query: 72 NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131 F +++IAG TAGIP ++A+++NLP+ Y+R K K HG +QIEG + KG ++++ Sbjct: 97 A--FPEVEVIAGTATAGIPHGAIIADKMNLPLAYIRSKPKDHGAGNQIEGRVTKGQKMVI 154 Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 IEDL++ G S+ + V + G + + +F Y+ P+ A F + ++KL L+ ++++ Sbjct: 155 IEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYE-LPKATANFEKASVKLVTLSNYSEL 213 Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNPMQWS 220 + +A+ + D L ++ F +N W Sbjct: 214 IKVAKVQGYIDADGLTLLKKFKENQETWQ 242 >3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A* Length = 234 Score = 182 bits (463), Expect = 5e-47 Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 4 NYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMD 63 N + Q N + + +A L EI AV P +P+ +SG+ SP+Y D R +S+ + R I Sbjct: 17 NLYFQSNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAA 76 Query: 64 LTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL 123 + + + ++++IAG TAGI A +++R++LPM YVR K+K HG+ +QIEG Sbjct: 77 GLEELIKEHFP--TVEVIAGTATAGIAHAAWVSDRMDLPMCYVRSKAKGHGKGNQIEGKA 134 Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLH 183 KG +V+V+EDL++ G S V+ +R++G + + +F Y+ + N+ + Sbjct: 135 EKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYE-LEAGKEKLEAANVASY 193 Query: 184 YLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQ--WSK 221 L+ ++ + +A + I ++++ + NP W Sbjct: 194 SLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAWIT 233 >2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1 Length = 211 Score = 158 bits (400), Expect = 1e-39 Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 3/210 (1%) Query: 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71 +A +A L +IKAV PE+P+ SGI SP+Y D R +S+ + R +I + +T+ Sbjct: 5 LASQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKA 64 Query: 72 NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131 + F +++IAG TAGIP ++A+++ LP Y+R K K HG +QIEG + KG ++++ Sbjct: 65 H--FPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGAGNQIEGRVLKGQKMVI 122 Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 IEDL++ G S+ + G + G+ F P+ F+E IKL L+ + ++ Sbjct: 123 IEDLISTGGSVLDXXXXXSREGADV-LGVVAIFTYELPKASQNFKEAGIKLITLSNYTEL 181 Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNPMQWSK 221 + +A+ +D L ++ F ++ + W + Sbjct: 182 IAVAKLQGYITNDGLHLLKKFKEDQVNWQQ 211 >2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} Length = 205 Score = 152 bits (386), Expect = 5e-38 Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 7/200 (3%) Query: 16 VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF 75 + L++++A F + L SG+ SP+YID R ++S R S + D+ +T +N G Sbjct: 6 LVTGLYDVQAFKF---GDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQT-AQNAGI 61 Query: 76 ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDL 135 D + G +P AT++ +PM+ RK++K +G K +EG + G L+IED+ Sbjct: 62 S-FDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCLIIEDV 120 Query: 136 VTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIA 195 VT G+S+ E V+V++ G + D I L D + + + I+LH + T + +L I Sbjct: 121 VTSGSSVLETVEVLQKEGLKVTDAIVLL--DREQGGKDKLQAHGIRLHSVCTLSKMLEIL 178 Query: 196 EKLKIFNHDVLEEVRCFLDN 215 E+ K + + + V+ F+ Sbjct: 179 EQQKKVDAETVGRVKRFIQE 198 >3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae} Length = 238 Score = 122 bits (308), Expect = 5e-29 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 19/210 (9%) Query: 17 AKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFE 76 + E + + F + L SG SP + + + + A V I F Sbjct: 34 IEFALEKQVLKF---GEFTLKSGRKSPYFFNAGLFNTGRDLARLGRFYAAALVDSGIEF- 89 Query: 77 SIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGARVL 130 D++ G GIP AT A L + P + RK++K HG+ + G RV+ Sbjct: 90 --DVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEAKNHGEGGNLVGS-KLEGRVM 146 Query: 131 VIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-----DIFPEVPARFRENNIKLHYL 185 +++D++T G ++ E +++I+ + + + + R+ + + Sbjct: 147 LVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISI 206 Query: 186 ATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 + D++T E+ + LE V+ + Sbjct: 207 VSLTDLITYLEQQGNNT-EHLEAVKAYRAQ 235 >1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A Length = 213 Score = 122 bits (307), Expect = 7e-29 Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 19/213 (8%) Query: 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNI 73 + + + F + L SG SP + + + R +++ A+ ++ + Sbjct: 6 RQFIEFALNKQVLKF---GEFTLKSGRKSPYFFNAGLFNTG-RDLALLGRFYAEALVDS- 60 Query: 74 GFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGA 127 D++ G GIP AT A L +LP + RK++K HG+ + G +G Sbjct: 61 -GIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG- 118 Query: 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-----DIFPEVPARFRENNIKL 182 RV++++D++T G ++ E +++I+ G + + + R+ K+ Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKV 178 Query: 183 HYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 + T D++ E+ L VR + + Sbjct: 179 ISIITLKDLIAYLEEKPDMAEH-LAAVRAYREE 210 >3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis} Length = 232 Score = 121 bits (304), Expect = 1e-28 Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 23/227 (10%) Query: 1 MIVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM 60 N + Q N + + + + + F + L SG +SP + + + + ++ Sbjct: 14 GTENLYFQSN---AMFIEFALKNQVLKF---GEFTLKSGRISPYFFNAGLFNTGAQLATL 67 Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHG 114 + ++ + DI+ G GIP ++ L ++P + RK++K HG Sbjct: 68 ADYYAQLIIKSDVKY---DILFGPAYKGIPLVAAISTVLALKYNIDMPYAFDRKEAKDHG 124 Query: 115 QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY------DIF 168 + G +VL+I+D++T G + +E ++ I + Sbjct: 125 EGGVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDI 184 Query: 169 PEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 ++ NI + + + I + + + ++++ + + Sbjct: 185 SATKKISQDFNIPVLAVTNFESIFEYVK--ENLDETMIDKFKQYRQK 229 >2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A* Length = 226 Score = 97.1 bits (241), Expect = 2e-21 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 26/218 (11%) Query: 16 VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF 75 ++ E +A+ F + L SG SP + + + ++ + ++ F Sbjct: 12 FLELAIECQALRF---GSFKLKSGRESPYFFNLGLFNTGKLLSNLATAYAIAIIQSDLKF 68 Query: 76 ESIDIIAGGETAGIPFATLLAERL---------NLPMIYVRKKSKKHGQKSQIEGHLFKG 126 + I A GIP A ++ +L N+ + RK++K HG+ I G + Sbjct: 69 DVIFGPAYK---GIPLAAIVCVKLAEIGGSKFQNIQYAFNRKEAKDHGEGGIIVGSALEN 125 Query: 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY---------DIFPEVPARFRE 177 R+L+I+D++T G ++ E ++I ++ G + I + ++ Sbjct: 126 KRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEGLSATQTVSKK 185 Query: 178 NNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 I + + + I+T E + ++ +L Sbjct: 186 YGIPVLSIVSLIHIITYLEGR--ITAEEKSKIEQYLQT 221 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Length = 236 Score = 91.2 bits (226), Expect = 2e-19 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 29/201 (14%) Query: 19 MLFEIKAVNFSPENPYHLTSGIVSP----LYIDCRKLISFVRARSMIMDLTAKTVLRNIG 74 +L + A++ + Y S + SP + D + I D + Sbjct: 11 LLDDSHALSQLLKKSYRWYSPVFSPRNVPRFADVSSITESPETLKAIRDFLVQRYRAM-- 68 Query: 75 FESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH------------ 122 + I G + G F ++A L +P + +RK K G + E + Sbjct: 69 SPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVM 128 Query: 123 ------LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP-----EV 171 + KG+RV++I+D++ G + ++++ S ++ + + + Sbjct: 129 TIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHS 188 Query: 172 PARFRENNIKLHYLATWNDIL 192 A R +IK L + + + Sbjct: 189 TANSRYKDIKFISLLSDDALT 209 >2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix} Length = 178 Score = 87.9 bits (217), Expect = 2e-18 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 8/183 (4%) Query: 15 LVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIG 74 ++AK+L + AV + L+SG S +YID R+L+ + S+ +DL + + Sbjct: 1 MLAKVLKKRGAVLR---GDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLE--VGGQD 55 Query: 75 FESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIED 134 + G T G+P+A +LA RL+ P+ YVR + K HG SQ+EG RV+V++D Sbjct: 56 LARSSAVIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTLSQVEGD-PPKGRVVVVDD 114 Query: 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTI 194 + T G S+ + ++V+R +G + + L D ++L +AT IL Sbjct: 115 VATTGTSIAKSIEVLRSNGYTVGTALVLV--DRGEGAGELLARMGVRLVSVATLKTILEK 172 Query: 195 AEK 197 Sbjct: 173 LGW 175 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Length = 291 Score = 82.7 bits (204), Expect = 6e-17 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 30/192 (15%) Query: 45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104 Y+ ++ S + L A ID++ T GIP A A LN+P++ Sbjct: 102 YVYLTDILGKPSVLSKVGKLFA----SVFAEREIDVVMTVATKGIPLAYAAASYLNVPVV 157 Query: 105 YVRKKSKKHGQKSQIE-----------------GHLFKGARVLVIEDLVTLGNSMFEFVK 147 VRK +K + + G+ VL+I+D + G ++ + Sbjct: 158 IVRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMIN 217 Query: 148 VIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLE 207 ++ + + G+ V R + + L L+ TI K K Sbjct: 218 LLDEFNANV---AGIGVLVEAEGVDERLVDEYMSLLTLS------TINMKEKSIEIQNGN 268 Query: 208 EVRCFLDNPMQW 219 +R F DN ++ Sbjct: 269 FLRFFKDNLLKN 280 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} Length = 180 Score = 82.5 bits (203), Expect = 7e-17 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 36 LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLL 95 L+SG + Y+D R+ RA ++ + + + + ++ + G + + + Sbjct: 26 LSSGKEADYYVDLRRATLHARAS-RLIGELLRELTADWDYVAVGGLTLG-ADPVATSVMH 83 Query: 96 AERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 A+ + VRK++KKHG + +IEG G +VLV+ED T GNS VK +R++G Sbjct: 84 ADGREIHAFVVRKEAKKHGMQRRIEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAE 143 Query: 156 IQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 + + D ++ Y+ D+ Sbjct: 144 VVGVATVV--DRATGAADVIAAEGLEYRYILGLEDL 177 >1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A* Length = 197 Score = 71.2 bits (174), Expect = 2e-13 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 19/149 (12%) Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120 +M + I I E++GI A + +L +P+++ RK + + Sbjct: 37 LMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLT 96 Query: 121 G------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 HL VL+I+D + G + V +++ +G I GIG+ Sbjct: 97 ASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIA-GIGI 155 Query: 163 FFYDIFPEVPARFRENNIKLHYLATWNDI 191 F + ++ LA + Sbjct: 156 VIEKSFQPGRDELVKLGYRVESLARIQSL 184 >1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1 Length = 175 Score = 68.9 bits (168), Expect = 8e-13 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 31/155 (20%) Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103 I + + + V + +I+ ET+ IP +LAE L LP Sbjct: 24 RRIPLVEFLGDPEFTRAAAEALRPLVPKEA-----EILFTTETSPIPLTHVLAEALGLPY 78 Query: 104 IYV-------------------RKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFE 144 + + + RV+++ D+V G +M Sbjct: 79 VVAXXXXXPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRA 138 Query: 145 FVKVIRDSGGIIQDGIGLFFY-------DIFPEVP 172 K++ +GG + + +F D E+P Sbjct: 139 MEKMVLRAGGHVVARLAVFRQGTPGLAVDTVAELP 173 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Length = 187 Score = 63.9 bits (155), Expect = 3e-11 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%) Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103 L+ D + ++D + ID I G E+ G F LA L + Sbjct: 26 LFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGF 85 Query: 104 IYVRKKSK--------------KHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVI 149 + VRK K + + G+ V++++D++ G S +++ Sbjct: 86 VPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELV 145 Query: 150 RDSGGII 156 + Sbjct: 146 EQLEANL 152 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Length = 186 Score = 63.8 bits (155), Expect = 3e-11 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 16/142 (11%) Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKK----------- 109 +D K V + I + G E+ G ++A L + + +RK Sbjct: 37 ALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCT 96 Query: 110 -SKKHGQKSQIEGH---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 ++ + IE L VL+ +D++ G ++ +++ +G ++ Y Sbjct: 97 FDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLY 156 Query: 166 DI-FPEVPARFRENNIKLHYLA 186 +I + + + +L + Sbjct: 157 EIEALKGREKVGQKCTRLFSVI 178 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 58.0 bits (140), Expect = 1e-09 Identities = 54/296 (18%), Positives = 91/296 (30%), Gaps = 133/296 (44%) Query: 30 PENPYHLTSGIVS-PL---------YIDCRKL-ISF--VRAR-------------SMIM- 62 P+ Y L S +S PL + + L + +R+ ++ + Sbjct: 226 PDKDY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284 Query: 63 --D---------LTAKTVLRNIGFE------------SI--DIIAGGETAGIPFATLLAE 97 D A TVL IG SI D + E G+P + Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--GVP--S---- 336 Query: 98 RLNLPMIYVRKKSKKHGQK------------SQIEGHLFKGARVLVI----EDLVTLGNS 141 PM+ + +++ Q Q+E L GA+ LV+ + L L N Sbjct: 337 ----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL-NL 391 Query: 142 MFEFVKVIRDSGGIIQDGIGLFFYDIF----PEVPARFRENNIKL--------HYLATWN 189 K G+ Q I F + RF L H L + Sbjct: 392 TLRKAKA---PSGLDQSRIP------FSERKLKFSNRF------LPVASPFHSHLLVPAS 436 Query: 190 DIL---------TI-AEKLKI--FN-HD----------VLEE-VRCFLDNPMQWSK 221 D++ + A+ ++I ++ D + E V C + P++W Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492 Score = 33.4 bits (76), Expect = 0.048 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 26/81 (32%) Query: 6 FPQQNI--IAELVAKM---LFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM 60 F Q+ + + E V K L EI VN++ EN ++ +G D R L Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEI--VNYNVENQQYVAAG-------DLRAL--------- 1862 Query: 61 IMDLTAKTVLRNIGFESIDII 81 D T VL I + IDII Sbjct: 1863 --D-TVTNVLNFIKLQKIDII 1880 Score = 31.8 bits (72), Expect = 0.14 Identities = 39/231 (16%), Positives = 58/231 (25%), Gaps = 91/231 (39%) Query: 12 IAELVAKMLFEIKAVNF--SPENPYHLTSGIVSPLYIDCRKLI--SFVRARSMIMDLTAK 67 AELV K L + S P + + L F Sbjct: 57 PAELVGKFL------GYVSSLVEPSKVGQ------FDQVLNLCLTEFEN----------- 93 Query: 68 TVLRNIGFESIDI--IAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH-LF 124 L DI +A T L + L Y+ + + LF Sbjct: 94 CYLEG-----NDIHALAAKLLQEND--TTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146 Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF------YDIFPEVPARFREN 178 + E L ++F GG Q +F Y + + Sbjct: 147 RAVG----EGNAQLV-AIF---------GG--QGNTDDYFEELRDLYQTYHVLVGDL--- 187 Query: 179 NIKLHYLATWNDILTIAEKL-----------KIFNH--DVLEEVRCFLDNP 216 I AE L K+F ++LE +L+NP Sbjct: 188 ------------IKFSAETLSELIRTTLDAEKVFTQGLNILE----WLENP 222 Score = 28.8 bits (64), Expect = 1.0 Identities = 35/175 (20%), Positives = 49/175 (28%), Gaps = 71/175 (40%) Query: 3 VN-YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMI 61 N + P + I VN +N + SG LY Sbjct: 356 TNSHLPAGKQVE---------ISLVN-GAKN--LVVSGPPQSLY-------GLNLT---- 392 Query: 62 MDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAER-LN-----LPMIYVRKKSKKHGQ 115 LR S G + + IPF+ ER L LP+ S H Sbjct: 393 --------LRKAKAPS-----GLDQSRIPFS----ERKLKFSNRFLPV-----ASPFHS- 429 Query: 116 KSQIEGHLFKGARVLVIEDL----VTLGNSMFEF-V------KVIRDSGG-IIQD 158 HL A L+ +DL V+ + V +R G I + Sbjct: 430 ------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Length = 190 Score = 51.9 bits (124), Expect = 1e-07 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 15/139 (10%) Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120 L+ ++ I + G E G F +A L + + VRK K + Sbjct: 47 AYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISET 106 Query: 121 --------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 + G +VLV++DL+ G ++ VK+IR GG + Sbjct: 107 YDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVA-DAAFIINL 165 Query: 167 IFPEVPARFRENNIKLHYL 185 R + I + L Sbjct: 166 FDLGGEQRLEKQGITSYSL 184 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Length = 319 Score = 43.3 bits (102), Expect = 5e-05 Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLF-KGARVLVIEDLVTL 138 ++ + G+ A LA++LN + + K+ K + +G ++++D+V Sbjct: 169 LVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDT 228 Query: 139 GNSMFEFVKVIRDSG 153 ++ + +V+++ G Sbjct: 229 AGTLCKAAQVLKERG 243 >1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A* Length = 152 Score = 41.4 bits (97), Expect = 2e-04 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%) Query: 79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFK----GARVLVIED 134 I G+ LLA L + + S + L + G +VI+D Sbjct: 30 KGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDD 89 Query: 135 LVTLGNSMFEFVKVIRD 151 LV G + ++ Sbjct: 90 LVDTGGTAVAIREMYPK 106 >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Length = 504 Score = 35.8 bits (82), Expect = 0.008 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 16/118 (13%) Query: 52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI------- 104 IS AR + + + R ID++ A +A L P Sbjct: 269 ISVYSARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNR 328 Query: 105 YVRKKSKKHGQKSQIEG---------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 YV + GQ+ + + F+ VL+++D + G + + +++ R++G Sbjct: 329 YVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAG 386 >1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A* Length = 205 Score = 34.1 bits (78), Expect = 0.029 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 66 AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL-- 123 + + R+ + + ++ G I F + L+ ++LP+ +G ++ G + Sbjct: 50 GEMITRDYEGKDL-VLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 108 Query: 124 -------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151 +G VL++ED++ G ++ + + Sbjct: 109 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 143 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 32.5 bits (73), Expect = 0.086 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 33/155 (21%) Query: 10 NIIAELVAKM---LFEIKAVNFSPENPYHLTSGIV-----SPLYIDCRKLISFVRARSMI 61 NIIAE + KM F K + F+ LT +V SP+ D + FV + Sbjct: 683 NIIAEGIEKMGVRTFSQKEMAFNLLG--LLTPEVVELCQKSPVMADLNGGLQFV---PEL 737 Query: 62 MDLTAKTVLRNIGFESIDI-------------IAGGETAGIPFATL-LAERLNLPMIYVR 107 + TAK LR E+ ++ + G +A +A + + R N+ + + Sbjct: 738 KEFTAK--LRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPE 795 Query: 108 KKSKKHGQK---SQIEGHLFKGARVLVIEDLVTLG 139 K K ++ +++EG L RV+V+ +G Sbjct: 796 LKPYKQVKQIAPAELEG-LLDLERVIVVTGFAEVG 829 >2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis} Length = 185 Score = 29.5 bits (66), Expect = 0.63 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 66 AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL-- 123 + + R+ + + ++ G I F + L+ ++LP+ +G ++ G + Sbjct: 30 GEMITRDYEGKDL-VLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 88 Query: 124 -------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151 +G VL++ED++ G ++ + + Sbjct: 89 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 123 >1j7j_A HPRT, hypoxanthine phosphoribosyltransferase; glycosyltransferase, nucleotide metabolism, purine salvage; 2.30A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A Length = 178 Score = 29.1 bits (65), Expect = 0.83 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 51 LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS 110 +I ++ I +L + R S ++ G F L + +P + Sbjct: 8 MIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRGSFMFMADLCREVQVPHEVDFMTA 67 Query: 111 KKHGQKSQIEGHL---------FKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 +G + +G VL++ED++ GN++ + +++ Sbjct: 68 SSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILGLRE 119 >1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1 Length = 153 Score = 29.0 bits (64), Expect = 0.88 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 71 RNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH-------- 122 + D+I G G+ A L+ L + V G + E Sbjct: 20 EKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHG 79 Query: 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 K RV++++D+ G ++ ++ ++ G Sbjct: 80 DLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGA 111 >3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine phosphoribosyltransferase, 2-(N- morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A* Length = 204 Score = 29.1 bits (65), Expect = 0.96 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL---------FKGARV 129 + G +PF L +R + + +G + G + +G + Sbjct: 60 PLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDI 119 Query: 130 LVIEDLVTLGNSMFEFVKVIRDSG 153 L++ED++ G ++ V + + Sbjct: 120 LIVEDIIDSGLTLSYLVDLFKYRK 143 >3idw_A Actin cytoskeleton-regulatory complex protein SLA1; clathrin adaptor, endocytosis, SAM domain, yeast, actin- binding, cell membrane; 1.85A {Saccharomyces cerevisiae} Length = 72 Score = 28.5 bits (64), Expect = 1.2 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Query: 52 ISFVRAR---SMIMDLTAKTVLRNIGFESIDIIA 82 I+F R + M+ D+ ++LR +G DI+ Sbjct: 24 INFDREQLTEDMMPDIN-NSMLRTLGLREGDIVR 56 >3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm, magnesium, metal-binding, pantothenate biosynthesis; 2.10A {Burkholderia pseudomallei} Length = 269 Score = 28.5 bits (63), Expect = 1.3 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 18/92 (19%) Query: 84 GETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNS-M 142 E A + L++P I + ++ GQ VLV+ D++ + Sbjct: 186 LEAVPTLVAAEVTRELSIPTIGIGAGAECSGQ-------------VLVLHDMLGVFPGKR 232 Query: 143 FEFVKVIRDSGGIIQDGIGLFFYDI----FPE 170 FVK I + + + FP Sbjct: 233 PRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPG 264 >1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110 Score = 28.4 bits (63), Expect = 1.5 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLV 136 ++++ G G+ + L P +Y+ ++ G + +G L G R+L + Sbjct: 11 TVELERGPSGLGMGLIDGMHTHLGAPGLYI--QTLLPGSPAAADGRLSLGDRILEVNGSS 68 Query: 137 TLGNSMFEFVKVIRDSGGIIQ 157 LG V +IR G ++ Sbjct: 69 LLGLGYLRAVDLIRHGGKKMR 89 >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472 Score = 27.2 bits (59), Expect = 2.9 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 12/48 (25%) Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGI-----IQDGIGLFFYDI 167 G +V +I + G++ GG+ D L D Sbjct: 21 AGKKVTLISKRIDGGSTPIA-------KGGVAASVGSDDSPELHAQDT 61 >2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Length = 86 Score = 27.2 bits (60), Expect = 3.4 Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 110 SKKHGQKSQIEGHLFKGARV 129 S G +SQ+ ++ GARV Sbjct: 3 SGSSGVRSQVLKYMVPGARV 22 >3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synaptic density, glutametergic receptors, carbohydrate metabolism, cell cycle; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170 Score = 26.6 bits (58), Expect = 4.2 Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 I+V K+ G + +G + ++ ++ +G + V+R++ G ++ Sbjct: 113 IFV--KTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164 >3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125 Score = 26.8 bits (59), Expect = 5.0 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 P +Y+ + ++G + G + + G + E K+I++ G + Sbjct: 45 PCLYI--VQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 97 >1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108 Score = 26.4 bits (58), Expect = 5.9 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Query: 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 IYV K+ ++ +G + KG RVL + + G + + V+ +R++G ++ Sbjct: 44 IYV--KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 95 >1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Score = 26.5 bits (58), Expect = 5.9 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 Y+ G ++ G L +G +VL + + E +I G + Sbjct: 51 AYI--AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAE 102 >2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvx_B* Length = 744 Score = 25.8 bits (56), Expect = 7.9 Identities = 7/14 (50%), Positives = 7/14 (50%) Query: 21 FEIKAVNFSPENPY 34 I A N S EN Y Sbjct: 670 LVIDAPNNSTENFY 683 >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5a_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 1q8i_A* Length = 786 Score = 25.5 bits (55), Expect = 9.4 Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 8/46 (17%) Query: 184 YLATWNDILTIAEKLK-----IFNHDVLEEVRCFLDN---PMQWSK 221 Y ++ ++L+ ++ DV R ++ W + Sbjct: 85 YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVE 130 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.142 0.418 Gapped Lambda K H 0.267 0.0706 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,048,477 Number of extensions: 96464 Number of successful extensions: 502 Number of sequences better than 10.0: 1 Number of HSP's gapped: 469 Number of HSP's successfully gapped: 52 Length of query: 228 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 139 Effective length of database: 3,535,514 Effective search space: 491436446 Effective search space used: 491436446 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.0 bits)