RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781011|ref|YP_003065424.1| orotate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (228 letters)



>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
           glycosyltransferase, magnesium, pyrimidine biosynthesis;
           2.40A {Streptococcus mutans}
          Length = 243

 Score =  189 bits (480), Expect = 7e-49
 Identities = 69/209 (33%), Positives = 124/209 (59%), Gaps = 3/209 (1%)

Query: 12  IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71
           +A+ +A+ L +IKAV   PE P+   SGI SP+Y D R  +S+   R++I +   +T+  
Sbjct: 37  LAKDIARDLLDIKAVYLKPEEPFTWASGIKSPIYTDNRITLSYPETRTLIENGFVETIKE 96

Query: 72  NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131
              F  +++IAG  TAGIP   ++A+++NLP+ Y+R K K HG  +QIEG + KG ++++
Sbjct: 97  A--FPEVEVIAGTATAGIPHGAIIADKMNLPLAYIRSKPKDHGAGNQIEGRVTKGQKMVI 154

Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191
           IEDL++ G S+ + V   +  G  +   + +F Y+  P+  A F + ++KL  L+ ++++
Sbjct: 155 IEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYE-LPKATANFEKASVKLVTLSNYSEL 213

Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNPMQWS 220
           + +A+     + D L  ++ F +N   W 
Sbjct: 214 IKVAKVQGYIDADGLTLLKKFKENQETWQ 242


>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
           ribonucleotide biosynthesis, structural genomics,
           infectious diseases; 1.75A {Bacillus anthracis} PDB:
           3osc_A*
          Length = 234

 Score =  182 bits (463), Expect = 5e-47
 Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 4   NYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMD 63
           N + Q N + + +A  L EI AV   P +P+  +SG+ SP+Y D R  +S+ + R  I  
Sbjct: 17  NLYFQSNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAA 76

Query: 64  LTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL 123
              + +  +    ++++IAG  TAGI  A  +++R++LPM YVR K+K HG+ +QIEG  
Sbjct: 77  GLEELIKEHFP--TVEVIAGTATAGIAHAAWVSDRMDLPMCYVRSKAKGHGKGNQIEGKA 134

Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLH 183
            KG +V+V+EDL++ G S    V+ +R++G  +   + +F Y+       +    N+  +
Sbjct: 135 EKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYE-LEAGKEKLEAANVASY 193

Query: 184 YLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQ--WSK 221
            L+ ++ +  +A +  I      ++++ +  NP    W  
Sbjct: 194 SLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAWIT 233


>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
           genomics, PSI, protein structure initiative; 1.95A
           {Streptococcus pyogenes} SCOP: c.61.1.1
          Length = 211

 Score =  158 bits (400), Expect = 1e-39
 Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 3/210 (1%)

Query: 12  IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71
           +A  +A  L +IKAV   PE+P+   SGI SP+Y D R  +S+ + R +I +   +T+  
Sbjct: 5   LASQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKA 64

Query: 72  NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131
           +  F  +++IAG  TAGIP   ++A+++ LP  Y+R K K HG  +QIEG + KG ++++
Sbjct: 65  H--FPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGAGNQIEGRVLKGQKMVI 122

Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191
           IEDL++ G S+ +        G  +  G+   F    P+    F+E  IKL  L+ + ++
Sbjct: 123 IEDLISTGGSVLDXXXXXSREGADV-LGVVAIFTYELPKASQNFKEAGIKLITLSNYTEL 181

Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNPMQWSK 221
           + +A+      +D L  ++ F ++ + W +
Sbjct: 182 IAVAKLQGYITNDGLHLLKKFKEDQVNWQQ 211


>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
           multifunctional enzyme, lyase, polymorphism,
           decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
           sapiens}
          Length = 205

 Score =  152 bits (386), Expect = 5e-38
 Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 7/200 (3%)

Query: 16  VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF 75
           +   L++++A  F     + L SG+ SP+YID R ++S  R  S + D+  +T  +N G 
Sbjct: 6   LVTGLYDVQAFKF---GDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQT-AQNAGI 61

Query: 76  ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDL 135
              D + G     +P AT++     +PM+  RK++K +G K  +EG +  G   L+IED+
Sbjct: 62  S-FDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCLIIEDV 120

Query: 136 VTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIA 195
           VT G+S+ E V+V++  G  + D I L   D       + + + I+LH + T + +L I 
Sbjct: 121 VTSGSSVLETVEVLQKEGLKVTDAIVLL--DREQGGKDKLQAHGIRLHSVCTLSKMLEIL 178

Query: 196 EKLKIFNHDVLEEVRCFLDN 215
           E+ K  + + +  V+ F+  
Sbjct: 179 EQQKKVDAETVGRVKRFIQE 198


>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
           ribonucleotide biosynthesis, infectious diseases; 2.10A
           {Vibrio cholerae}
          Length = 238

 Score =  122 bits (308), Expect = 5e-29
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 19/210 (9%)

Query: 17  AKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFE 76
            +   E + + F     + L SG  SP + +     +      +     A  V   I F 
Sbjct: 34  IEFALEKQVLKF---GEFTLKSGRKSPYFFNAGLFNTGRDLARLGRFYAAALVDSGIEF- 89

Query: 77  SIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGARVL 130
             D++ G    GIP AT  A  L      + P  + RK++K HG+   + G      RV+
Sbjct: 90  --DVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEAKNHGEGGNLVGS-KLEGRVM 146

Query: 131 VIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-----DIFPEVPARFRENNIKLHYL 185
           +++D++T G ++ E +++I+ +   +   +               +    R+    +  +
Sbjct: 147 LVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISI 206

Query: 186 ATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215
            +  D++T  E+      + LE V+ +   
Sbjct: 207 VSLTDLITYLEQQGNNT-EHLEAVKAYRAQ 235


>1lh0_A OMP synthase; loop closure, monomer closure, orotate
           phosphoribosyltransferase; HET: ORO PRP; 2.00A
           {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
           1sto_A* 1oro_A
          Length = 213

 Score =  122 bits (307), Expect = 7e-29
 Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 19/213 (8%)

Query: 14  ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNI 73
               +     + + F     + L SG  SP + +     +  R  +++    A+ ++ + 
Sbjct: 6   RQFIEFALNKQVLKF---GEFTLKSGRKSPYFFNAGLFNTG-RDLALLGRFYAEALVDS- 60

Query: 74  GFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGA 127
                D++ G    GIP AT  A  L      +LP  + RK++K HG+   + G   +G 
Sbjct: 61  -GIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG- 118

Query: 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-----DIFPEVPARFRENNIKL 182
           RV++++D++T G ++ E +++I+  G  +   +               +    R+   K+
Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKV 178

Query: 183 HYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215
             + T  D++   E+        L  VR + + 
Sbjct: 179 ISIITLKDLIAYLEEKPDMAEH-LAAVRAYREE 210


>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
           genomics, center for structural genomics of infectious
           diseases; 1.90A {Francisella tularensis}
          Length = 232

 Score =  121 bits (304), Expect = 1e-28
 Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 23/227 (10%)

Query: 1   MIVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM 60
              N + Q N    +  +   + + + F     + L SG +SP + +     +  +  ++
Sbjct: 14  GTENLYFQSN---AMFIEFALKNQVLKF---GEFTLKSGRISPYFFNAGLFNTGAQLATL 67

Query: 61  IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHG 114
                   +  ++ +   DI+ G    GIP    ++  L      ++P  + RK++K HG
Sbjct: 68  ADYYAQLIIKSDVKY---DILFGPAYKGIPLVAAISTVLALKYNIDMPYAFDRKEAKDHG 124

Query: 115 QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY------DIF 168
           +     G      +VL+I+D++T G + +E    ++     I   +              
Sbjct: 125 EGGVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDI 184

Query: 169 PEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215
                  ++ NI +  +  +  I    +  +  +  ++++ + +   
Sbjct: 185 SATKKISQDFNIPVLAVTNFESIFEYVK--ENLDETMIDKFKQYRQK 229


>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
           complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
           PDB: 2pry_A* 2prz_A*
          Length = 226

 Score = 97.1 bits (241), Expect = 2e-21
 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 26/218 (11%)

Query: 16  VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF 75
             ++  E +A+ F     + L SG  SP + +     +     ++        +  ++ F
Sbjct: 12  FLELAIECQALRF---GSFKLKSGRESPYFFNLGLFNTGKLLSNLATAYAIAIIQSDLKF 68

Query: 76  ESIDIIAGGETAGIPFATLLAERL---------NLPMIYVRKKSKKHGQKSQIEGHLFKG 126
           + I   A     GIP A ++  +L         N+   + RK++K HG+   I G   + 
Sbjct: 69  DVIFGPAYK---GIPLAAIVCVKLAEIGGSKFQNIQYAFNRKEAKDHGEGGIIVGSALEN 125

Query: 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY---------DIFPEVPARFRE 177
            R+L+I+D++T G ++ E  ++I ++ G +   I              +         ++
Sbjct: 126 KRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEGLSATQTVSKK 185

Query: 178 NNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215
             I +  + +   I+T  E       +   ++  +L  
Sbjct: 186 YGIPVLSIVSLIHIITYLEGR--ITAEEKSKIEQYLQT 221


>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
           HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
           PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
          Length = 236

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 29/201 (14%)

Query: 19  MLFEIKAVNFSPENPYHLTSGIVSP----LYIDCRKLISFVRARSMIMDLTAKTVLRNIG 74
           +L +  A++   +  Y   S + SP     + D   +         I D   +       
Sbjct: 11  LLDDSHALSQLLKKSYRWYSPVFSPRNVPRFADVSSITESPETLKAIRDFLVQRYRAM-- 68

Query: 75  FESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH------------ 122
             +   I G +  G  F  ++A  L +P + +RK  K  G   + E +            
Sbjct: 69  SPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVM 128

Query: 123 ------LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP-----EV 171
                 + KG+RV++I+D++  G +    ++++  S  ++ + + +              
Sbjct: 129 TIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHS 188

Query: 172 PARFRENNIKLHYLATWNDIL 192
            A  R  +IK   L + + + 
Sbjct: 189 TANSRYKDIKFISLLSDDALT 209


>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
           glycosyltransferase, magnesium, pyrimidine biosynthesis,
           structural genomics; 1.80A {Aeropyrum pernix}
          Length = 178

 Score = 87.9 bits (217), Expect = 2e-18
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 15  LVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIG 74
           ++AK+L +  AV       + L+SG  S +YID R+L+    + S+ +DL  +  +    
Sbjct: 1   MLAKVLKKRGAVLR---GDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLE--VGGQD 55

Query: 75  FESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIED 134
                 + G  T G+P+A +LA RL+ P+ YVR + K HG  SQ+EG      RV+V++D
Sbjct: 56  LARSSAVIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTLSQVEGD-PPKGRVVVVDD 114

Query: 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTI 194
           + T G S+ + ++V+R +G  +   + L   D             ++L  +AT   IL  
Sbjct: 115 VATTGTSIAKSIEVLRSNGYTVGTALVLV--DRGEGAGELLARMGVRLVSVATLKTILEK 172

Query: 195 AEK 197
              
Sbjct: 173 LGW 175


>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
           domain, phosphoribosyltranseferases, domain
           recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
           2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
           1p4a_A*
          Length = 291

 Score = 82.7 bits (204), Expect = 6e-17
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 30/192 (15%)

Query: 45  YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104
           Y+    ++      S +  L A           ID++    T GIP A   A  LN+P++
Sbjct: 102 YVYLTDILGKPSVLSKVGKLFA----SVFAEREIDVVMTVATKGIPLAYAAASYLNVPVV 157

Query: 105 YVRKKSKKHGQKSQIE-----------------GHLFKGARVLVIEDLVTLGNSMFEFVK 147
            VRK +K     +                      +  G+ VL+I+D +  G ++   + 
Sbjct: 158 IVRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMIN 217

Query: 148 VIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLE 207
           ++ +    +    G+        V  R  +  + L  L+      TI  K K        
Sbjct: 218 LLDEFNANV---AGIGVLVEAEGVDERLVDEYMSLLTLS------TINMKEKSIEIQNGN 268

Query: 208 EVRCFLDNPMQW 219
            +R F DN ++ 
Sbjct: 269 FLRFFKDNLLKN 280


>2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein
           structure initiative, midwest center for structural
           genomics; 2.44A {Corynebacterium diphtheriae NCTC13129}
          Length = 180

 Score = 82.5 bits (203), Expect = 7e-17
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 36  LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLL 95
           L+SG  +  Y+D R+     RA   ++    + +  +  + ++  +  G    +  + + 
Sbjct: 26  LSSGKEADYYVDLRRATLHARAS-RLIGELLRELTADWDYVAVGGLTLG-ADPVATSVMH 83

Query: 96  AERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155
           A+   +    VRK++KKHG + +IEG    G +VLV+ED  T GNS    VK +R++G  
Sbjct: 84  ADGREIHAFVVRKEAKKHGMQRRIEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAE 143

Query: 156 IQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191
           +     +   D             ++  Y+    D+
Sbjct: 144 VVGVATVV--DRATGAADVIAAEGLEYRYILGLEDL 177


>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural
           genomics, PSI, protein structure initative; HET: G4P;
           1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
          Length = 197

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 19/149 (12%)

Query: 61  IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120
           +M             + I  I   E++GI  A +   +L +P+++ RK        + + 
Sbjct: 37  LMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLT 96

Query: 121 G------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162
                              HL     VL+I+D +  G +    V +++ +G  I  GIG+
Sbjct: 97  ASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIA-GIGI 155

Query: 163 FFYDIFPEVPARFRENNIKLHYLATWNDI 191
                F        +   ++  LA    +
Sbjct: 156 VIEKSFQPGRDELVKLGYRVESLARIQSL 184


>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
           riken structural genomics/proteomics initiative, RSGI;
           1.94A {Thermus thermophilus} SCOP: c.61.1.1
          Length = 175

 Score = 68.9 bits (168), Expect = 8e-13
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 31/155 (20%)

Query: 44  LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103
             I   + +          +     V +       +I+   ET+ IP   +LAE L LP 
Sbjct: 24  RRIPLVEFLGDPEFTRAAAEALRPLVPKEA-----EILFTTETSPIPLTHVLAEALGLPY 78

Query: 104 IYV-------------------RKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFE 144
           +                          +     +         RV+++ D+V  G +M  
Sbjct: 79  VVAXXXXXPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRA 138

Query: 145 FVKVIRDSGGIIQDGIGLFFY-------DIFPEVP 172
             K++  +GG +   + +F         D   E+P
Sbjct: 139 MEKMVLRAGGHVVARLAVFRQGTPGLAVDTVAELP 173


>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
           catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
           c.61.1.1 PDB: 1g2p_A
          Length = 187

 Score = 63.9 bits (155), Expect = 3e-11
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 44  LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103
           L+ D   +         ++D     +        ID I G E+ G  F   LA  L +  
Sbjct: 26  LFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGF 85

Query: 104 IYVRKKSK--------------KHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVI 149
           + VRK  K                      +  +  G+ V++++D++  G S     +++
Sbjct: 86  VPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELV 145

Query: 150 RDSGGII 156
                 +
Sbjct: 146 EQLEANL 152


>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
           metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia
           intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
          Length = 186

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 61  IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKK----------- 109
            +D   K V  +     I  + G E+ G     ++A  L +  + +RK            
Sbjct: 37  ALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCT 96

Query: 110 -SKKHGQKSQIEGH---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165
              ++ +   IE     L     VL+ +D++  G ++   +++   +G   ++      Y
Sbjct: 97  FDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLY 156

Query: 166 DI-FPEVPARFRENNIKLHYLA 186
           +I   +   +  +   +L  + 
Sbjct: 157 EIEALKGREKVGQKCTRLFSVI 178


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 54/296 (18%), Positives = 91/296 (30%), Gaps = 133/296 (44%)

Query: 30  PENPYHLTSGIVS-PL---------YIDCRKL-ISF--VRAR-------------SMIM- 62
           P+  Y L S  +S PL          +  + L  +   +R+              ++ + 
Sbjct: 226 PDKDY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284

Query: 63  --D---------LTAKTVLRNIGFE------------SI--DIIAGGETAGIPFATLLAE 97
             D           A TVL  IG              SI  D +   E  G+P  +    
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--GVP--S---- 336

Query: 98  RLNLPMIYVRKKSKKHGQK------------SQIEGHLFKGARVLVI----EDLVTLGNS 141
               PM+ +   +++  Q              Q+E  L  GA+ LV+    + L  L N 
Sbjct: 337 ----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL-NL 391

Query: 142 MFEFVKVIRDSGGIIQDGIGLFFYDIF----PEVPARFRENNIKL--------HYLATWN 189
                K      G+ Q  I       F     +   RF      L        H L   +
Sbjct: 392 TLRKAKA---PSGLDQSRIP------FSERKLKFSNRF------LPVASPFHSHLLVPAS 436

Query: 190 DIL---------TI-AEKLKI--FN-HD----------VLEE-VRCFLDNPMQWSK 221
           D++         +  A+ ++I  ++  D          + E  V C +  P++W  
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492



 Score = 33.4 bits (76), Expect = 0.048
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 26/81 (32%)

Query: 6    FPQQNI--IAELVAKM---LFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM 60
            F Q+ +  + E V K    L EI  VN++ EN  ++ +G       D R L         
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEI--VNYNVENQQYVAAG-------DLRAL--------- 1862

Query: 61   IMDLTAKTVLRNIGFESIDII 81
              D T   VL  I  + IDII
Sbjct: 1863 --D-TVTNVLNFIKLQKIDII 1880



 Score = 31.8 bits (72), Expect = 0.14
 Identities = 39/231 (16%), Positives = 58/231 (25%), Gaps = 91/231 (39%)

Query: 12  IAELVAKMLFEIKAVNF--SPENPYHLTSGIVSPLYIDCRKLI--SFVRARSMIMDLTAK 67
            AELV K L       +  S   P  +        +     L    F             
Sbjct: 57  PAELVGKFL------GYVSSLVEPSKVGQ------FDQVLNLCLTEFEN----------- 93

Query: 68  TVLRNIGFESIDI--IAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH-LF 124
             L        DI  +A          T L +   L   Y+  +        +     LF
Sbjct: 94  CYLEG-----NDIHALAAKLLQEND--TTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146

Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF------YDIFPEVPARFREN 178
           +       E    L  ++F         GG  Q     +F      Y  +  +       
Sbjct: 147 RAVG----EGNAQLV-AIF---------GG--QGNTDDYFEELRDLYQTYHVLVGDL--- 187

Query: 179 NIKLHYLATWNDILTIAEKL-----------KIFNH--DVLEEVRCFLDNP 216
                       I   AE L           K+F    ++LE    +L+NP
Sbjct: 188 ------------IKFSAETLSELIRTTLDAEKVFTQGLNILE----WLENP 222



 Score = 28.8 bits (64), Expect = 1.0
 Identities = 35/175 (20%), Positives = 49/175 (28%), Gaps = 71/175 (40%)

Query: 3   VN-YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMI 61
            N + P    +          I  VN   +N   + SG    LY                
Sbjct: 356 TNSHLPAGKQVE---------ISLVN-GAKN--LVVSGPPQSLY-------GLNLT---- 392

Query: 62  MDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAER-LN-----LPMIYVRKKSKKHGQ 115
                   LR     S     G + + IPF+    ER L      LP+      S  H  
Sbjct: 393 --------LRKAKAPS-----GLDQSRIPFS----ERKLKFSNRFLPV-----ASPFHS- 429

Query: 116 KSQIEGHLFKGARVLVIEDL----VTLGNSMFEF-V------KVIRDSGG-IIQD 158
                 HL   A  L+ +DL    V+      +  V        +R   G I + 
Sbjct: 430 ------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478


>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 1.25A {Escherichia coli K12}
          Length = 190

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 61  IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120
              L+   ++       I  + G E  G  F   +A  L +  + VRK  K   +     
Sbjct: 47  AYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISET 106

Query: 121 --------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166
                           +  G +VLV++DL+  G ++   VK+IR  GG +          
Sbjct: 107 YDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVA-DAAFIINL 165

Query: 167 IFPEVPARFRENNIKLHYL 185
                  R  +  I  + L
Sbjct: 166 FDLGGEQRLEKQGITSYSL 184


>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics
           center for infectious disease, ssgcid, cytoplasm,
           magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei
           1710B}
          Length = 319

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 80  IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLF-KGARVLVIEDLVTL 138
           ++   +  G+  A  LA++LN  +  + K+  K      +      +G   ++++D+V  
Sbjct: 169 LVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDT 228

Query: 139 GNSMFEFVKVIRDSG 153
             ++ +  +V+++ G
Sbjct: 229 AGTLCKAAQVLKERG 243


>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
           enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
           1a96_A* 1a95_A 1a98_A 1a97_A*
          Length = 152

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 79  DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFK----GARVLVIED 134
             I      G+    LLA  L +  +     S       +    L +    G   +VI+D
Sbjct: 30  KGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDD 89

Query: 135 LVTLGNSMFEFVKVIRD 151
           LV  G +     ++   
Sbjct: 90  LVDTGGTAVAIREMYPK 106


>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine
           biosynthesis, glycosyltransferase, glutamine
           amidotransferase; HET: PIN; 2.00A {Escherichia coli}
           SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
           1ecj_A*
          Length = 504

 Score = 35.8 bits (82), Expect = 0.008
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 52  ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI------- 104
           IS   AR  +     + + R      ID++          A  +A  L  P         
Sbjct: 269 ISVYSARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNR 328

Query: 105 YVRKKSKKHGQKSQIEG---------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
           YV +     GQ+ + +            F+   VL+++D +  G +  + +++ R++G
Sbjct: 329 YVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAG 386


>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
           complex; HET: IMP; 2.20A {Thermoanaerobacter
           tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A*
          Length = 205

 Score = 34.1 bits (78), Expect = 0.029
 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 66  AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL-- 123
            + + R+   + + ++ G     I F + L+  ++LP+         +G  ++  G +  
Sbjct: 50  GEMITRDYEGKDL-VLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 108

Query: 124 -------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151
                   +G  VL++ED++  G ++    + +  
Sbjct: 109 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 143


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 32.5 bits (73), Expect = 0.086
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 33/155 (21%)

Query: 10  NIIAELVAKM---LFEIKAVNFSPENPYHLTSGIV-----SPLYIDCRKLISFVRARSMI 61
           NIIAE + KM    F  K + F+      LT  +V     SP+  D    + FV     +
Sbjct: 683 NIIAEGIEKMGVRTFSQKEMAFNLLG--LLTPEVVELCQKSPVMADLNGGLQFV---PEL 737

Query: 62  MDLTAKTVLRNIGFESIDI-------------IAGGETAGIPFATL-LAERLNLPMIYVR 107
            + TAK  LR    E+ ++             +  G +A   +A + +  R N+ + +  
Sbjct: 738 KEFTAK--LRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPE 795

Query: 108 KKSKKHGQK---SQIEGHLFKGARVLVIEDLVTLG 139
            K  K  ++   +++EG L    RV+V+     +G
Sbjct: 796 LKPYKQVKQIAPAELEG-LLDLERVIVVTGFAEVG 829


>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
           inhibitor design, selectivity; 1.70A {Thermoanaerobacter
           tengcongensis}
          Length = 185

 Score = 29.5 bits (66), Expect = 0.63
 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 66  AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL-- 123
            + + R+   + + ++ G     I F + L+  ++LP+         +G  ++  G +  
Sbjct: 30  GEMITRDYEGKDL-VLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 88

Query: 124 -------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151
                   +G  VL++ED++  G ++    + +  
Sbjct: 89  IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 123


>1j7j_A HPRT, hypoxanthine phosphoribosyltransferase; glycosyltransferase,
           nucleotide metabolism, purine salvage; 2.30A {Salmonella
           typhimurium} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A
          Length = 178

 Score = 29.1 bits (65), Expect = 0.83
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 51  LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS 110
           +I     ++ I +L  +   R     S  ++ G       F   L   + +P       +
Sbjct: 8   MIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRGSFMFMADLCREVQVPHEVDFMTA 67

Query: 111 KKHGQKSQIEGHL---------FKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
             +G        +          +G  VL++ED++  GN++ +  +++    
Sbjct: 68  SSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILGLRE 119


>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
           structural genomics/proteomics initiative, RSGI; 2.50A
           {Pyrococcus horikoshii} SCOP: c.61.1.1
          Length = 153

 Score = 29.0 bits (64), Expect = 0.88
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 71  RNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH-------- 122
             +     D+I G    G+  A  L+  L    + V       G   + E          
Sbjct: 20  EKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHG 79

Query: 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154
             K  RV++++D+   G ++   ++ ++  G 
Sbjct: 80  DLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGA 111


>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine
           phosphoribosyltransferase, 2-(N-
           morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A
           {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
          Length = 204

 Score = 29.1 bits (65), Expect = 0.96
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 79  DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL---------FKGARV 129
            +  G     +PF   L +R +  +         +G  +   G +          +G  +
Sbjct: 60  PLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDI 119

Query: 130 LVIEDLVTLGNSMFEFVKVIRDSG 153
           L++ED++  G ++   V + +   
Sbjct: 120 LIVEDIIDSGLTLSYLVDLFKYRK 143


>3idw_A Actin cytoskeleton-regulatory complex protein SLA1; clathrin
          adaptor, endocytosis, SAM domain, yeast, actin-
          binding, cell membrane; 1.85A {Saccharomyces
          cerevisiae}
          Length = 72

 Score = 28.5 bits (64), Expect = 1.2
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 52 ISFVRAR---SMIMDLTAKTVLRNIGFESIDIIA 82
          I+F R +    M+ D+   ++LR +G    DI+ 
Sbjct: 24 INFDREQLTEDMMPDIN-NSMLRTLGLREGDIVR 56


>3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm,
           magnesium, metal-binding, pantothenate biosynthesis;
           2.10A {Burkholderia pseudomallei}
          Length = 269

 Score = 28.5 bits (63), Expect = 1.3
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 18/92 (19%)

Query: 84  GETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNS-M 142
            E      A  +   L++P I +   ++  GQ             VLV+ D++ +     
Sbjct: 186 LEAVPTLVAAEVTRELSIPTIGIGAGAECSGQ-------------VLVLHDMLGVFPGKR 232

Query: 143 FEFVKVIRDSGGIIQDGIGLFFYDI----FPE 170
             FVK        I   +  +   +    FP 
Sbjct: 233 PRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPG 264


>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
           genomics, riken structural genomics/proteomics
           initiative, unknown function; NMR {Homo sapiens} SCOP:
           b.36.1.1
          Length = 110

 Score = 28.4 bits (63), Expect = 1.5
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 77  SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLV 136
           ++++  G    G+     +   L  P +Y+  ++   G  +  +G L  G R+L +    
Sbjct: 11  TVELERGPSGLGMGLIDGMHTHLGAPGLYI--QTLLPGSPAAADGRLSLGDRILEVNGSS 68

Query: 137 TLGNSMFEFVKVIRDSGGIIQ 157
            LG      V +IR  G  ++
Sbjct: 69  LLGLGYLRAVDLIRHGGKKMR 89


>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
           {Sulfolobus tokodaii}
          Length = 472

 Score = 27.2 bits (59), Expect = 2.9
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 12/48 (25%)

Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGI-----IQDGIGLFFYDI 167
            G +V +I   +  G++           GG+       D   L   D 
Sbjct: 21  AGKKVTLISKRIDGGSTPIA-------KGGVAASVGSDDSPELHAQDT 61


>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain
           containing protein 1, structural genomics, NPPSFA; NMR
           {Homo sapiens} SCOP: b.34.19.1
          Length = 86

 Score = 27.2 bits (60), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 110 SKKHGQKSQIEGHLFKGARV 129
           S   G +SQ+  ++  GARV
Sbjct: 3   SGSSGVRSQVLKYMVPGARV 22


>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synaptic
           density, glutametergic receptors, carbohydrate
           metabolism, cell cycle; HET: MES; 1.85A {Rattus
           norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
          Length = 170

 Score = 26.6 bits (58), Expect = 4.2
 Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157
           I+V  K+   G  +  +G +     ++ ++    +G +      V+R++ G ++
Sbjct: 113 IFV--KTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164


>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
           protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
          Length = 125

 Score = 26.8 bits (59), Expect = 5.0
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156
           P +Y+          + ++G +  G  +  +      G +  E  K+I++  G +
Sbjct: 45  PCLYI--VQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 97


>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
           proteomics in europe, spine, structural genomics,
           hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
          Length = 108

 Score = 26.4 bits (58), Expect = 5.9
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157
           IYV  K+      ++ +G + KG RVL +  +   G +  + V+ +R++G ++ 
Sbjct: 44  IYV--KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 95


>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
           riken structural genomics/proteomics initiative, RSGI,
           unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
          Length = 117

 Score = 26.5 bits (58), Expect = 5.9
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157
            Y+       G  ++  G L +G +VL    +     +  E   +I    G  +
Sbjct: 51  AYI--AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAE 102


>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
           family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
           {Bacteroides thetaiotaomicron} PDB: 2wvx_B*
          Length = 744

 Score = 25.8 bits (56), Expect = 7.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 21  FEIKAVNFSPENPY 34
             I A N S EN Y
Sbjct: 670 LVIDAPNNSTENFY 683


>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
           repair, DNA-binding; HET: DNA DOC DCP; 1.92A
           {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5a_A*
           3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 1q8i_A*
          Length = 786

 Score = 25.5 bits (55), Expect = 9.4
 Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 8/46 (17%)

Query: 184 YLATWNDILTIAEKLK-----IFNHDVLEEVRCFLDN---PMQWSK 221
           Y      ++   ++L+     ++  DV    R  ++       W +
Sbjct: 85  YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVE 130


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,048,477
Number of extensions: 96464
Number of successful extensions: 502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 52
Length of query: 228
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 139
Effective length of database: 3,535,514
Effective search space: 491436446
Effective search space used: 491436446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.0 bits)