HHsearch alignment for GI: 254781012 and conserved domain: COG0402
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only].
Probab=98.34 E-value=0.00017 Score=47.31 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEECCC--HHHHHHHHHHCCCCC
Q ss_conf 06889999999987398222025755555430014676545789999-962069539970578--589999987057332
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPL-RNKLPNLKIILEHIT--TSNGIDYVNNATNIA 191 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~-~a~~~~~~iHi~HiS--T~~sv~lir~ak~vt 191 (349)
T Consensus 196 ~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~-~~-~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~-~g~~ 272 (421)
T COG0402 196 SPELLESLDELARKYGLPVHIHLAETLDEVERV-LE-PYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAE-SGAS 272 (421)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-HH-HHCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH-CCCE
T ss_conf 989999999999727993799816873278899-98-75024888886448657874999668799899999986-6985
Q ss_pred EEEEC-CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 02302-31003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 192 GSITV-HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 192 aEVTP-HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
T Consensus 273 v~~cP~sN~~L----------~sG--~~p----------~~~~~~~g-v~v~~gTD~~~~~~~--------~d~l~-~~~ 320 (421)
T COG0402 273 VVHCPRSNLKL----------GSG--IAP----------VRRLLERG-VNVALGTDGAASNNV--------LDMLR-EMR 320 (421)
T ss_pred EEECHHHHHHC----------CCC--CCC----------HHHHHHCC-CEEEEEEECCCCCCC--------CCHHH-HHH
T ss_conf 99884666434----------777--888----------89998546-828999724676786--------35689-999
Q ss_pred HHHHHH-HHH-CCCCHHH--HHHHHHHCCHHHCCC-------CCCCCEEEEEECCCCEEECHH
Q ss_conf 999999-972-0699999--999982431788188-------988852899947971784711
Q gi|254781012|r 271 LNCLAQ-IFE-EENKLEN--LESFVSINGATWYGI-------PVNTRKISLKRREQPIIFDEK 322 (349)
Q Consensus 271 ~~~~~~-~~~-~~~~L~~--l~~~~s~npa~~~gl-------~~~~~~i~l~d~~~~~~v~~~ 322 (349)
T Consensus 321 ~a~~l~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~~~G~le~G~~ADlvvld~~~~~~~~~~ 383 (421)
T COG0402 321 TADLLQKLAGGLLAAQLPGEALDMATLGGAKALGLDDIGSLEVGKKADLVVLDASAPHLAPLR 383 (421)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 999998763456543103789999827899980897678706787168899868884100145