HHsearch alignment for GI: 254781012 and conserved domain: COG4464
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=91.21 E-value=1.1 Score=23.62 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCEEEEECC----C-----HHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHH-HHHH---HHHHHCCCCCEEEEEEE
Q ss_conf 642375088----1-----7889874987418873999838-9514898989999-9999---99983868846995013
Q gi|254781012|r 9 PDDWHLHLR----D-----GEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDAC-AYRQ---RILNALPPEYDFSPLMT 74 (349)
Q Consensus 9 ~~D~HvH~R----e-----g~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~-~~~~---r~~~~~~~~~~~~~~~~ 74 (349)
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCE
T ss_conf 94501346678788987589999999999975760795133324776689199999999999988886267826616866
Q ss_pred EEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCC-CCEECCCCC
Q ss_conf 45278999889987440687210221045510025654100688999999998739-822202575
Q gi|254781012|r 75 IYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIG-MPLCIHGEI 139 (349)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~-~~i~~H~E~ 139 (349)
T Consensus 81 IrIt~~v-----l~~l~~g~I~tindskYlLIEF~~~~v~~y--a~~lf~elq~kGi~PIIAHPER 139 (254)
T COG4464 81 IRITGDV-----LDDLDKGIILTINDSKYLLIEFPMNHVPRY--ADQLFFELQSKGIIPIIAHPER 139 (254)
T ss_pred EEECHHH-----HHHHHCCCCCCCCCCCEEEEECCCCCCHHH--HHHHHHHHHHCCCEEEEECHHH
T ss_conf 8975088-----878762843403366349997468862245--9999999997795036646256