HHsearch alignment for GI: 254781012 and conserved domain: PRK05985
>PRK05985 cytosine deaminase; Provisional.
Probab=98.87 E-value=6e-06 Score=56.22 Aligned_cols=294 Identities=15% Similarity=0.052 Sum_probs=128.0
Q ss_pred CEEEECCCCEEEEEC---------CC-------HHHH-------------------HHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 655864664237508---------81-------7889-------------------874987418873999838951489
Q gi|254781012|r 2 KKISLRVPDDWHLHL---------RD-------GEIL-------------------KTVLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~---------Re-------g~~~-------------------~~t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
T Consensus 47 G~lv~PGlVd~HtHl~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gtt~~~~~~~~~~~~ 126 (398)
T PRK05985 47 GALALPGLVDGHIHLDKTFWGMPWYPNEPGPSLRERIANERRYRLASGAPAAERALALARAAAAAGTTAMRSHVDVDPTA 126 (398)
T ss_pred CCEECCCCCHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 98877475316348301342474446787741999999899877410469999999999999957978999731256752
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEE--EEEE-EEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 89899999999999838688469--9501-34527899988998744068721022104551002565410068899999
Q gi|254781012|r 47 ITVDDACAYRQRILNALPPEYDF--SPLM-TIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 47 ~t~e~~~~~~~r~~~~~~~~~~~--~~~~-~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
T Consensus 127 ~-~~~~~~~~~-~~~~~~~~~~~~~~a~p~~g~~~~~~~~~~l~~~~~~~~~~~g~~~p~~~-----~-~~~~~~l~~~~ 198 (398)
T PRK05985 127 G-LRHLEAVLA-ARETLRGIIDIQLVAFPQSGVLSRPGTAELLDEALRAGADVVGGLDPAGI-----D-GDPDGQLDIVF 198 (398)
T ss_pred C-HHHHHHHHH-HHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC-----C-CCHHHHHHHHH
T ss_conf 2-679999999-99973445452688457642236857799999999837862356277576-----8-88699999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH-----HHHHHHHHHCCCCCEEEECCC
Q ss_conf 999873982220257555554300146765457899999620695399705785-----899999870573320230231
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT-----SNGIDYVNNATNIAGSITVHH 198 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST-----~~sv~lir~ak~vtaEVTPHH 198 (349)
T Consensus 199 ~lA~~~g~~i~iH~~e~~~~------~~~~~~~~~~~~~~~gl~g~v~~~H~~~l~~l~~~~~~~~~~-~~a~~~v~~-- 269 (398)
T PRK05985 199 GLAERHGVGIDIHLHEPGEL------GAFQLELIAARTRALGMQGRVAVSHAFCLGDLPERELDRLAA-RLAEAGVAI-- 269 (398)
T ss_pred HHHHHCCCCEEEEECCCCCC------HHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCHHHHHHHHH-HHHCCCCCE--
T ss_conf 99998599868987577771------077999999999982999998977555412699999999999-985299550--
Q ss_pred CCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 00397886137888311321346999999999999976994189713888653133215457754454367999999997
Q gi|254781012|r 199 LIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIF 278 (349)
Q Consensus 199 L~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~ 278 (349)
T Consensus 270 -~~~------~~~~---~~~~pv~------~l---~~aGV~-V~LGtDg~~~~~----~p~~~~d~--l~--~a~~~~~~ 321 (398)
T PRK05985 270 -MTN------APGS---RPVPPVA------AL---REAGVT-VFGGNDGIRDTW----WPYGNGDM--LE--RAMLIGYR 321 (398)
T ss_pred -ECC------CCCC---CCCCCHH------HH---HHCCCC-EEECCCCCCCCC----CCCCCHHH--HH--HHHHHHHH
T ss_conf -126------8767---8987499------99---976996-896378788877----87788789--99--99999975
Q ss_pred HCCC---CHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEEECC
Q ss_conf 2069---99999999824317881889------8885289994797178471122677771465797698338887416
Q gi|254781012|r 279 EEEN---KLENLESFVSINGATWYGIP------VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVMLHDN 348 (349)
Q Consensus 279 ~~~~---~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~~~~ 348 (349)
T Consensus 322 ~~~~~~~~~~~al~maT~~gAraLGl~d~~Le~Gk~ADlVl~d~~~~~~~~~~~p~---~~~V~~-----~Grvv~r~g 392 (398)
T PRK05985 322 SGFRTDDELEVALDCVTHGGARALGLADYGLAVGCRADFVLVDAETVAEAVVAVPV---RRLVVR-----GGRIVARDG 392 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCC---CEEEEE-----CCEEEEECC
T ss_conf 28998799999999998999997599986818998307899969898999740896---419999-----999997678