HHsearch alignment for GI: 254781012 and conserved domain: PRK09230
>PRK09230 cytosine deaminase; Provisional.
Probab=99.04 E-value=4e-07 Score=63.48 Aligned_cols=279 Identities=9% Similarity=0.120 Sum_probs=150.7
Q ss_pred CEEEECCCCEEEEECCC------------H-------------------HHHH----HHHHHHCCCCEEEEECCCC-CCC
Q ss_conf 65586466423750881------------7-------------------8898----7498741887399983895-148
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------------G-------------------EILK----TVLRDTAKNFRRALVMPNI-DPP 45 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------------g-------------------~~~~----~t~aa~aGG~TtV~~MPNT-~Pp 45 (349)
T Consensus 50 G~LvlP~fvd~H~HLDKt~~~~~p~~n~~gtl~~ai~~~~~~k~~~t~edv~~Ra~~~l~~~ia~Gtt~iRtHvDv~dp~ 129 (426)
T PRK09230 50 GGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPT 129 (426)
T ss_pred CCEECCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHEECCCCCCCCH
T ss_conf 98747786661033232473799887888588999999998763599899999999999999981824401334537703
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC-CCHHHHHHHHHCCC-EEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 98989999999999983868846995013452789-99889987440687-21022104551002565410068899999
Q gi|254781012|r 46 IITVDDACAYRQRILNALPPEYDFSPLMTIYLTET-TDPDDVEKGFTSQL-VQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 46 i~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
T Consensus 130 l~~leal~~~re~~~~~id--lQiVAFPQ~Gl~~~~~~~~Ll~eAl~~GadvvGGvp~~------~~~~~~~~~~L~~vf 201 (426)
T PRK09230 130 LTALKAMLEVKEEVAPWVD--LQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHF------EFTREYGVESLHKAF 201 (426)
T ss_pred HHHHHHHHHHHHHHHCCCE--EEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCC------CCCCHHHHHHHHHHH
T ss_conf 5169999999998435201--68883036542468877999999998089888478997------778045799999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH---------HHHHHHCCCCCEEE
Q ss_conf 999873982220257555554300146765457899999620695399705785899---------99987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG---------IDYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~s---------v~lir~ak~vtaEV 194 (349)
T Consensus 202 ~LA~~~~~~vDiHldE~~d~------~~~~l~~ia~~t~~~g~~grVt~sH~~sL~~~~~~~~~~~~~~laea-gi~vvs 274 (426)
T PRK09230 202 ALAQKYDRLIDVHCDEIDDE------QSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMS-GINFVA 274 (426)
T ss_pred HHHHHCCCCEEEEECCCCCC------HHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 99998299858877788883------37899999999998389986563000545339999999999999982-985785
Q ss_pred ECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 023-1003978861378883113213469999999999999769941897138886531332154577544543679999
Q gi|254781012|r 195 TVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNC 273 (349)
Q Consensus 195 TPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~ 273 (349)
T Consensus 275 lP~tNl~Lq------gR~~----~~p~~Rgvtpv~eL~~a---G-V~V~~GsDnv-------rD~w~P~G~~D~Le~a~l 333 (426)
T PRK09230 275 NPLVNIHLQ------GRFD----TYPKRRGITRVKEMLEA---G-INVCFGHDDV-------FDPWYPLGTANMLQVLHM 333 (426)
T ss_pred CCCCCCCCC------CCCC----CCCCCCCCCCHHHHHHC---C-CEEEEECCCC-------CCCCCCCCCCCHHHHHHH
T ss_conf 254332135------6567----78888887789999976---9-8699807888-------778748999889999999
Q ss_pred HHHHH--HCCCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCC
Q ss_conf 99997--206999999999824317881889------88852899947971
Q gi|254781012|r 274 LAQIF--EEENKLENLESFVSINGATWYGIP------VNTRKISLKRREQP 316 (349)
Q Consensus 274 ~~~~~--~~~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~ 316 (349)
T Consensus 334 ~~~~~~l~~~~~l~~~~~~vT~~~A~~lgl~d~gi~vG~~ADlVl~~a~~~ 384 (426)
T PRK09230 334 GLHVCQLMGYGQINDGLNLITTHSARTLNLQDYGIEVGNPANLIILPAENG 384 (426)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 999970488778999999974258886199875767899555899908998