HHsearch alignment for GI: 254781012 and conserved domain: PRK11449
>PRK11449 putative deoxyribonuclease YjjV; Provisional.
Probab=97.51 E-value=0.0078 Score=36.94 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=107.2
Q ss_pred CCCEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC---
Q ss_conf 66423750881----78898749874188739998389514898989999999999983868846995013452789---
Q gi|254781012|r 8 VPDDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTET--- 80 (349)
Q Consensus 8 ~~~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~--- 80 (349)
T Consensus 4 k~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~------~g~~~~~~~~~~~--l~~~~~~i----~~~vGiHP~~~~ 71 (258)
T PRK11449 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIV------PATEAANFARVLA--LAERYQPL----YAALGLHPGMLE 71 (258)
T ss_pred CEEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEE------ECCCHHHHHHHHH--HHHHCCCC----EEECCCCCCHHH
T ss_conf 37986117998154769999999999829999999------3499999999999--98759630----187058976111
Q ss_pred ----CCHHHHHHHHHC--CCEEEHHHCCCCCEECCCCC--CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHH
Q ss_conf ----998899874406--87210221045510025654--1006889999999987398222025755555430014676
Q gi|254781012|r 81 ----TDPDDVEKGFTS--QLVQAIKLYFAGSTTNSHHG--IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELM 152 (349)
Q Consensus 81 ----~~~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~--v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~ 152 (349)
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~vvaIGEiG--LDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~R~---------A~~~ 140 (258)
T PRK11449 72 KHSDVSLDQLQQALERRPAKVVAVGEIG--LDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR---------THDK 140 (258)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHH---------HHHH
T ss_conf 0570059999999981878789983456--4778899869999999999999999849975986221---------3799
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHH
Q ss_conf 54578999996206953997057858---999998705733202302310039788613788831132134699999999
Q gi|254781012|r 153 FIDKILDPLRNKLPNLKIILEHITTS---NGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLS 229 (349)
Q Consensus 153 ~~~~~l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~a 229 (349)
T Consensus 141 ----~~~~l-~~~~~~~~gi~H~FsG~~~~a~~~l~~G~yiS~---------~---------g~--it~~--~~~~~~~~ 193 (258)
T PRK11449 141 ----LAMHL-KRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGV---------G---------GT--ITYP--RASKTRDV 193 (258)
T ss_pred ----HHHHH-HHCCCCCCCEEEECCCCHHHHHHHHHCCCEEEE---------C---------EE--EECC--CCHHHHHH
T ss_conf ----99999-855888575476278999999999976982876---------5---------48--6346--77999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 9999976994189713888653133215457754454367999999997--20699999999982431788188
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIF--EEENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~--~~~~~L~~l~~~~s~npa~~~gl 301 (349)
T Consensus 194 v~~iPld-r--ll~ETDs-Pyl~-----p~~~rg~~NeP~~i~~v~~~iA~ik~~~~eev~~~~~~N~~~lF~l 258 (258)
T PRK11449 194 IAKLPLA-S--LLLETDA-PDMP-----LNGFQGQPNRPEQAARVFDVLCELRPEPADEIAEVLLNNTYTLFRV 258 (258)
T ss_pred HHHCCCH-H--EEEECCC-CCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9959915-6--8993369-9998-----9999999886189999999999886979999999999999998592