HHsearch alignment for GI: 254781012 and conserved domain: PRK13206
>PRK13206 ureC urease subunit alpha; Reviewed.
Probab=98.09 E-value=0.00049 Score=44.40 Aligned_cols=261 Identities=16% Similarity=0.195 Sum_probs=136.8
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
T Consensus 131 ~I~TAGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG--~~~i~~ml~a~d-~~P~N~g~---l 201 (573)
T PRK13206 131 RILTAGAIDCHVHLICPQIV---DEALGAGITTIIGGGTGPAEGSKATTVTPG--AWHLARMLEALD-GWPVNIAL---L 201 (573)
T ss_pred EEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCC--HHHHHHHHHHHH-CCCCEEEE---E
T ss_conf 07723733688984488889---999866970674587678777775101797--789999998503-17810556---4
Q ss_pred CCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78999--8899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
T Consensus 202 GKGn~s~~~~l~Eqi~A-Ga~GlKiH-------EDWGa-Tpa~Id~~L~vAde~DvQvaiHTDtL--------NEsGfve 264 (573)
T PRK13206 202 GKGNTVSPEAMWEQLRG-GAAGFKLH-------EDWGT-TPAAIDACLTVADAAGVQVALHSDTL--------NEAGFVE 264 (573)
T ss_pred ECCCCCCHHHHHHHHHH-CCCEEECC-------CCCCC-CHHHHHHHHHHHHHHCCEEEEECCCC--------CCCCCHH
T ss_conf 23667881789999972-52332102-------21378-87899988777786392689744876--------5444136
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHH---HHHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCC
Q ss_conf 789999962069539970578589---999987057--33-2023-------------------023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSN---GIDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~---sv~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~ 209 (349)
T Consensus 265 dTi~----Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NVLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 338 (573)
T PRK13206 265 DTLA----AIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPSVPEDLA-- 338 (573)
T ss_pred HHHH----HHCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHH--
T ss_conf 6788----7569740244215777777642532016788667889999886577266640838761378989820345--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
T Consensus 339 ------FAeSRIR~e--TIAAEDvLHDmGai-Si~sSDSQA---------MGRvG-Evi~RTWQtA~kMK~qrG~L~~d~ 399 (573)
T PRK13206 339 ------FAESRIRPS--TIAAEDLLHDIGAI-SMIGSDSQA---------MGRIG-EVVLRTWQTAHVMKRRRGALPGDG 399 (573)
T ss_pred ------HHHHCCCCC--HHHHHHHHHCCCCE-EEECCCCHH---------CCCCC-EEEEEHHHHHHHHHHCCCCCCCCC
T ss_conf ------666245520--14566665204633-234265221---------36540-135304676877865028798888
Q ss_pred -----CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf -----99999999824317881889--------888528999479
Q gi|254781012|r 283 -----KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 -----~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
T Consensus 400 ~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GK~ADlVLW~Pa 444 (573)
T PRK13206 400 RADNNRARRYVAKYTICPAVAHGLDHEIGSVEVGKLADLVLWEPA 444 (573)
T ss_pred CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 884089887776446686887486533346468851248763636