HHsearch alignment for GI: 254781012 and conserved domain: PRK13207

>PRK13207 ureC urease subunit alpha; Reviewed.
Probab=97.98  E-value=0.001  Score=42.44  Aligned_cols=261  Identities=17%  Similarity=0.180  Sum_probs=137.8

Q ss_pred             EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf             5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r    3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL   77 (349)
Q Consensus         3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l   77 (349)
T Consensus       125 ~I~TaGgiDtHvHfi~Pqq~---~~Al~sGiTT~iGGGtGPa~Gt~att~tpG~--~~i~~ml~a~d-~~P~N~g~---~  195 (568)
T PRK13207        125 LIVTAGGIDTHIHFICPQQI---EEALASGVTTMIGGGTGPATGTNATTCTPGP--WHIHRMLQAAD-AFPVNIGF---L  195 (568)
T ss_pred             CEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHHH-CCCCCEEE---E
T ss_conf             07712611665530588789---9998558668745876887666566668977--99999998654-07721356---6


Q ss_pred             CCCC--CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             7899--98899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r   78 TETT--DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID  155 (349)
Q Consensus        78 t~~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~  155 (349)
T Consensus       196 gKGn~s~~~~l~eqi~A-Ga~GlKiH-------EDwGa-tpa~Id~~L~vad~~DvQvaiHTDtL--------NEsGfvE  258 (568)
T PRK13207        196 GKGNASLPEALEEQIEA-GAIGLKLH-------EDWGA-TPAAIDNCLSVADEYDVQVAIHTDTL--------NESGFVE  258 (568)
T ss_pred             ECCCCCCCHHHHHHHHH-CCEEEEEE-------CCCCC-CHHHHHHHHHHHCCCCEEEEEEECCC--------CCCCEEC
T ss_conf             33667882789999861-82578850-------00378-88899878654122473699970666--------5566031


Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHH---HHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCC
Q ss_conf             7899999620695399705785899---99987057--33-2023-------------------023100397-886137
Q gi|254781012|r  156 KILDPLRNKLPNLKIILEHITTSNG---IDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHD  209 (349)
Q Consensus       156 ~~l~~~~a~~~~~~iHi~HiST~~s---v~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~  209 (349)
T Consensus       259 dT~~----Ai~gRtIHtyHtEGAGGGHAPDii~v~g~~nvLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva--  332 (568)
T PRK13207        259 DTIA----AFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVA--  332 (568)
T ss_pred             CHHH----HHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCHHHHH--
T ss_conf             2366----6279457776405777777616777624787677888999886656223312748874047988703566--


Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf             888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r  210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------  282 (349)
Q Consensus       210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------  282 (349)
T Consensus       333 ------FAeSRIR~e--TIAAEDvLhD~Gai-Si~sSDsQaM---------GRvG-Evi~RTwQtA~kmK~qrG~L~~d~  393 (568)
T PRK13207        333 ------FAESRIRRE--TIAAEDILHDLGAF-SMISSDSQAM---------GRVG-EVIIRTWQTAHKMKVQRGALPGDS  393 (568)
T ss_pred             ------HHHHHCHHH--HHHHHHHHHHCCCE-EEECCCHHHC---------CCCC-CEEECHHHHHHHHHHHCCCCCCCC
T ss_conf             ------666310066--66666654102413-3211520331---------5210-101124776999987448898877


Q ss_pred             ------CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf             ------99999999824317881889--------888528999479
Q gi|254781012|r  283 ------KLENLESFVSINGATWYGIP--------VNTRKISLKRRE  314 (349)
Q Consensus       283 ------~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~  314 (349)
T Consensus       394 ~~~DN~RikRYiAKyTINPAIahGis~~vGSvE~GK~ADlVlW~Pa  439 (568)
T PRK13207        394 ERNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPA  439 (568)
T ss_pred             CCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEEEECHH
T ss_conf             6665347877766621477886475322056457624227752536