HHsearch alignment for GI: 254781012 and conserved domain: PRK13309
>PRK13309 ureC urease subunit alpha; Reviewed.
Probab=98.22 E-value=0.00021 Score=46.65 Aligned_cols=261 Identities=14% Similarity=0.155 Sum_probs=137.6
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
T Consensus 129 ~I~TAGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~--~~i~~ml~a~d-~~P~N~g~---~ 199 (572)
T PRK13309 129 LILTAAGIDSHIHLISPQQA---YHALSNGVATFFGGGIGPTDGTNGTTVTPGP--WNIRQMLRSIE-GLPVNVGI---L 199 (572)
T ss_pred EEEECCCCCCEEECCCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHHH-CCCCCEEE---E
T ss_conf 16503653210000477889---9998568768756866787676663247977--99999997401-27710456---3
Q ss_pred CCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78999--8899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
T Consensus 200 gKGn~s~~~~L~eqi~A-Ga~GlKiH-------EDWGa-TPa~Id~~L~vAde~DvQvaiHTDTL--------NE~GfvE 262 (572)
T PRK13309 200 GKGNSYGRGPLLEQAIA-GVVGYKVH-------EDWGA-TANALRHALRMADEVDIQVSVHTDSL--------NECGYVE 262 (572)
T ss_pred ECCCCCCHHHHHHHHHH-CCCCCCCC-------CCCCC-CHHHHHHHHHHHHHHCCEEEEECCCC--------CCCCCHH
T ss_conf 13667880779999972-42545454-------43479-88999988777886392689745876--------6545004
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHH---HHHHHHHCC--CC-----------CE----E-----EECCCCCCCH-HHHHCC
Q ss_conf 789999962069539970578589---999987057--33-----------20----2-----3023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSN---GIDYVNNAT--NI-----------AG----S-----ITVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~---sv~lir~ak--~v-----------ta----E-----VTPHHL~lt~-~d~~~~ 209 (349)
T Consensus 263 dTi~----Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NVLPSSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 336 (572)
T PRK13309 263 DTID----AFEGRTIHTFHTEGAGGGHAPDIIRVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVS-- 336 (572)
T ss_pred HHHH----HHCCCCEEEEECCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHH--
T ss_conf 3588----7379721455305777787740401327777476789998887667145543848981488989820245--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
T Consensus 337 ------FAeSRIR~e--TIAAEDvLHDmGai-Si~sSDSQa---------MGRvG-Evi~RTWQtA~kMK~~rG~L~~d~ 397 (572)
T PRK13309 337 ------FAESRVRPE--TIAAENVLHDMGVI-SMFSSDSQA---------MGRVG-ENWLRILQTADAMKAARGKLPEDA 397 (572)
T ss_pred ------HHHHCCCCH--HHHHHHHHHCCCCE-EEECCCHHH---------CCCCC-CEEEHHHHHHHHHHHHCCCCCCCC
T ss_conf ------666345620--14566665205633-222260133---------26773-023014564988888608999888
Q ss_pred ------CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ------99999999824317881889--------888528999479
Q gi|254781012|r 283 ------KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ------~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
T Consensus 398 ~~nDN~RvkRYiAKyTINPAiahGis~~vGSvE~GKlADlVlW~Pa 443 (572)
T PRK13309 398 AGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWDPR 443 (572)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 8751888888666611175766175555356347862248753614