HHsearch alignment for GI: 254781012 and conserved domain: cd01308
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.93 E-value=4.4e-23 Score=162.19 Aligned_cols=285 Identities=12% Similarity=0.037 Sum_probs=147.9
Q ss_pred EEEECCCCEEEEECCC----HHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5586466423750881----788-----9874987418873999838951489898999999999998386884699501
Q gi|254781012|r 3 KISLRVPDDWHLHLRD----GEI-----LKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM 73 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re----g~~-----~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~ 73 (349)
T Consensus 50 ~~v~PG~ID~HvH~~~~g~~~~~~~~~~~~~~~~~~~~G~Tt~~~~~~t~~~~~~~~~~~~~~~~-~~~--~g~~~~~~~ 126 (387)
T cd01308 50 KILVPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARA-LEE--EGITCFVYT 126 (387)
T ss_pred CEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHH--CCCEEEEEC
T ss_conf 99885875512266688888775557889999999977951897057888645579999999999-886--496699952
Q ss_pred EEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCE-ECCCCCCCCCCCCHHHHHH
Q ss_conf 345278999889987440687210221045510025654100688999999998739822-2025755555430014676
Q gi|254781012|r 74 TIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPL-CIHGEILNQDIDIFDRELM 152 (349)
Q Consensus 74 ~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i-~~H~E~~~~~~~~~~~E~~ 152 (349)
T Consensus 127 g~~~~p~---~~--------------~~--------~-~~~~~---~~~~~~~~~~g~~~~~~~~~~-----~p~~~~~- 171 (387)
T cd01308 127 GSYEVPT---RT--------------IT--------G-SIRKD---LLLIDKVIGVGEIAISDHRSS-----QPTVEEL- 171 (387)
T ss_pred CCCCCCH---HH--------------HH--------C-CHHHH---HHHHHHHHCCCCEEECCCCCC-----CCCHHHH-
T ss_conf 6656846---65--------------53--------2-06677---987787616671551034455-----6779999-
Q ss_pred HHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHH----CCCCCEEEECCCCCCCHHHHHC--------------CCC
Q ss_conf 54578999996206---95399705785899999870----5733202302310039788613--------------788
Q gi|254781012|r 153 FIDKILDPLRNKLP---NLKIILEHITTSNGIDYVNN----ATNIAGSITVHHLIINRNAIFH--------------DGL 211 (349)
Q Consensus 153 ~~~~~l~~~~a~~~---~~~iHi~HiST~~sv~lir~----ak~vtaEVTPHHL~lt~~d~~~--------------~~~ 211 (349)
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~l~~~~~~~~~~~~~i~~~~~~ 250 (387)
T cd01308 172 -ARIAAEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSI 250 (387)
T ss_pred -HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHEEECCEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf -9999998766764388887999723657679999999980696354155421238677899999999759857884477
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCHHHHHH
Q ss_conf 8311321346999999999999976994189713888-653133215457754454367999999997-20699999999
Q gi|254781012|r 212 NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSA-PHWDSSKESSCGCAGIYTARNALNCLAQIF-EEENKLENLES 289 (349)
Q Consensus 212 ~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHA-PH~~eeK~~~~~~~g~~~~~~~~~~~~~~~-~~~~~L~~l~~ 289 (349)
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~d~~~~~~~~~~~g~~~~~~~g~~~t~~~~~~~~v~~g~l~le~av~ 329 (387)
T cd01308 251 DPQFRKEGEVRPSEALKRLLEQGVPLER-ITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEVALR 329 (387)
T ss_pred CHHHCCCCCCCCHHHHHHHHHCCCCCCE-EEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 7543027766889999999974998643-999946999866410148551367675888999999999976999999999
Q ss_pred HHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEE
Q ss_conf 98243178818898-------8852899947971784711226777714
Q gi|254781012|r 290 FVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSIT 331 (349)
Q Consensus 290 ~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~t 331 (349)
T Consensus 330 ~~T~NPAk~lgl~~kG~I~~G~dADlVi~D~dl~--v--~~v~~~G~~v 374 (387)
T cd01308 330 VITSNVARILKLRKKGEIQPGFDADLVILDKDLD--I--NSVIAKGQIM 374 (387)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC--E--EEEEECCEEE
T ss_conf 9858999974999998668898263899899998--6--5899988999