HHsearch alignment for GI: 254781012 and conserved domain: cd01312
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.92 E-value=1.2e-06 Score=60.57 Aligned_cols=170 Identities=13% Similarity=0.137 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCC-CHHHHHH---HH------------HHHHH-HHHHHHCCCEEEEECCC-
Q ss_conf 0688999999998739822202575555543-0014676---54------------57899-99962069539970578-
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDID-IFDRELM---FI------------DKILD-PLRNKLPNLKIILEHIT- 176 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~-~~~~E~~---~~------------~~~l~-~~~a~~~~~~iHi~HiS- 176 (349)
T Consensus 161 s~e~~~~~~~~a~~~~~~~~~HlaE~~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~pv~~l~~~G~L~~~~~~aH~~~ 240 (381)
T cd01312 161 HPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCVY 240 (381)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCC
T ss_conf 99999999999985399177602587889999998506313566664100011257898999998399899879995258
Q ss_pred -HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf -5899999870573320230231003978861378883113213469999999999999769941897138886531332
Q gi|254781012|r 177 -TSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSK 255 (349)
Q Consensus 177 -T~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK 255 (349)
T Consensus 241 l~~~di~~la~~g-~~v~~cP~----Sn-~~lg~--G~-----~pi~~---------~~~~Gv~-v~LGTDg~~~n~--- 294 (381)
T cd01312 241 ANLEEAEILASRG-ASIALCPR----SN-RLLNG--GK-----LDVSE---------LKKAGIP-VSLGTDGLSSNI--- 294 (381)
T ss_pred CCHHHHHHHHHCC-CEEEECHH----HH-HHHCC--CC-----CCHHH---------HHHCCCE-EEEECCCCCCCC---
T ss_conf 9989999999769-85887767----78-87468--97-----36999---------9978890-999489987788---
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEE
Q ss_conf 15457754454367999999997206---999999999824317881889------8885289994797178
Q gi|254781012|r 256 ESSCGCAGIYTARNALNCLAQIFEEE---NKLENLESFVSINGATWYGIP------VNTRKISLKRREQPII 318 (349)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~---~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~ 318 (349)
T Consensus 295 -------~-~d~~~~mr~~~~~~~~~~~~~~~~~~l~~aT~~gA~aLgl~iGsLe~Gk~ADliv~D~~~P~~ 358 (381)
T cd01312 295 -------S-LSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGLNNGEIEAGKRADFAVFELPGPGI 358 (381)
T ss_pred -------C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf -------6-239999999999724589988999999999999999958878536877867899994899998