HHsearch alignment for GI: 254781012 and conserved domain: cd01314
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=0 Score=405.08 Aligned_cols=333 Identities=14% Similarity=0.142 Sum_probs=255.1
Q ss_pred CEEEECCCCEEEEECCC--------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 65586466423750881--------7889874987418873999838951489898999999999998386884699501
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD--------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM 73 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re--------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~ 73 (349)
T Consensus 46 G~~V~PGfID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~ 121 (447)
T cd01314 46 GKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADG----KSVIDYGF 121 (447)
T ss_pred CCEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC----CCEEEEEE
T ss_conf 99994088987725788878864502288999999968916995168899998789999999998537----86355546
Q ss_pred EEEECCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC------
Q ss_conf 345278999--889987440687210221045510025654100688999999998739822202575555543------
Q gi|254781012|r 74 TIYLTETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID------ 145 (349)
Q Consensus 74 ~~~lt~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~------ 145 (349)
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~-G~~~~k~~~~~----~~~~~~~~~~l~~~~~~a~~~~~~~~~h~e~~~~~~~~~~~~~ 196 (447)
T cd01314 122 HMIITDWTDSVIEELPELVKK-GISSFKVFMAY----KGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL 196 (447)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEEECC----CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 899954887799999999983-87867787403----7962358799999999998639979992588579999999998
Q ss_pred ------------CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCC
Q ss_conf ------------0014676545789999962069539970578589999987057----332023023100397886137
Q gi|254781012|r 146 ------------IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHD 209 (349)
Q Consensus 146 ------------~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~ 209 (349)
T Consensus 197 ~~G~~~~~~h~~~rp~~~e~~av~r~~~la~~~g~~~~i~His~~~~~~~i~~ar~~G~~v~~e~~~~~l~~~~~~~~~~ 276 (447)
T cd01314 197 AQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKD 276 (447)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHCCCHHHHCCC
T ss_conf 65887645465668899999999999999998099689996076889999999997699288973410331789896346
Q ss_pred CC-CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC---CCC--CCCCCCHHHHHHHHHH--HHHCC
Q ss_conf 88-8311321346999999999999976994189713888653133215---457--7544543679999999--97206
Q gi|254781012|r 210 GL-NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKES---SCG--CAGIYTARNALNCLAQ--IFEEE 281 (349)
Q Consensus 210 ~~-~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~---~~~--~~g~~~~~~~~~~~~~--~~~~~ 281 (349)
T Consensus 277 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~i-~~i~sDh~p~~~~~k~~~~~~f~~~~~G~~g~e~~l~~~~~~~v~~g~ 355 (447)
T cd01314 277 WFEGAKYVCSPPLRPKEDQEALWDGLSSGTL-QTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGR 355 (447)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 7533378606766998899999877635973-588647766677787635687644769987611218999999998289
Q ss_pred CCHHHHHHHHHHCCHHHCCCCC--------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 9999999998243178818898--------885289994797178471122677771465797698338887
Q gi|254781012|r 282 NKLENLESFVSINGATWYGIPV--------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 282 ~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
T Consensus 356 lsl~~~v~~~T~nPAk~lGl~~~kGsI~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-g~~~~g~v~~ 426 (447)
T cd01314 356 ITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFE-GMKVKGWPVV 426 (447)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 9999999998389999849888887637899777899959998898856674658837767-9799889999