HHsearch alignment for GI: 254781012 and conserved domain: cd01314

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00  E-value=0  Score=405.08  Aligned_cols=333  Identities=14%  Similarity=0.142  Sum_probs=255.1

Q ss_pred             CEEEECCCCEEEEECCC--------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             65586466423750881--------7889874987418873999838951489898999999999998386884699501
Q gi|254781012|r    2 KKISLRVPDDWHLHLRD--------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM   73 (349)
Q Consensus         2 ~~l~lp~~~D~HvH~Re--------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~   73 (349)
T Consensus        46 G~~V~PGfID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~  121 (447)
T cd01314          46 GKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADG----KSVIDYGF  121 (447)
T ss_pred             CCEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC----CCEEEEEE
T ss_conf             99994088987725788878864502288999999968916995168899998789999999998537----86355546


Q ss_pred             EEEECCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC------
Q ss_conf             345278999--889987440687210221045510025654100688999999998739822202575555543------
Q gi|254781012|r   74 TIYLTETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID------  145 (349)
Q Consensus        74 ~~~lt~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~------  145 (349)
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~-G~~~~k~~~~~----~~~~~~~~~~l~~~~~~a~~~~~~~~~h~e~~~~~~~~~~~~~  196 (447)
T cd01314         122 HMIITDWTDSVIEELPELVKK-GISSFKVFMAY----KGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL  196 (447)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCEEEEEECC----CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             899954887799999999983-87867787403----7962358799999999998639979992588579999999998


Q ss_pred             ------------CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCC
Q ss_conf             ------------0014676545789999962069539970578589999987057----332023023100397886137
Q gi|254781012|r  146 ------------IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHD  209 (349)
Q Consensus       146 ------------~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~  209 (349)
T Consensus       197 ~~G~~~~~~h~~~rp~~~e~~av~r~~~la~~~g~~~~i~His~~~~~~~i~~ar~~G~~v~~e~~~~~l~~~~~~~~~~  276 (447)
T cd01314         197 AQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKD  276 (447)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHCCCHHHHCCC
T ss_conf             65887645465668899999999999999998099689996076889999999997699288973410331789896346


Q ss_pred             CC-CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC---CCC--CCCCCCHHHHHHHHHH--HHHCC
Q ss_conf             88-8311321346999999999999976994189713888653133215---457--7544543679999999--97206
Q gi|254781012|r  210 GL-NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKES---SCG--CAGIYTARNALNCLAQ--IFEEE  281 (349)
Q Consensus       210 ~~-~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~---~~~--~~g~~~~~~~~~~~~~--~~~~~  281 (349)
T Consensus       277 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~i-~~i~sDh~p~~~~~k~~~~~~f~~~~~G~~g~e~~l~~~~~~~v~~g~  355 (447)
T cd01314         277 WFEGAKYVCSPPLRPKEDQEALWDGLSSGTL-QTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGR  355 (447)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             7533378606766998899999877635973-588647766677787635687644769987611218999999998289


Q ss_pred             CCHHHHHHHHHHCCHHHCCCCC--------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf             9999999998243178818898--------885289994797178471122677771465797698338887
Q gi|254781012|r  282 NKLENLESFVSINGATWYGIPV--------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML  345 (349)
Q Consensus       282 ~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~  345 (349)
T Consensus       356 lsl~~~v~~~T~nPAk~lGl~~~kGsI~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-g~~~~g~v~~  426 (447)
T cd01314         356 ITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFE-GMKVKGWPVV  426 (447)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf             9999999998389999849888887637899777899959998898856674658837767-9799889999