HHsearch alignment for GI: 254781012 and conserved domain: cd01318
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=0 Score=540.50 Aligned_cols=325 Identities=17% Similarity=0.173 Sum_probs=270.2
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
T Consensus 2 ~~v~PG~ID~hvH~r~pg~~~~e~~~s~s~AA~aGGvTtv~~mPnt~p~~~~~~~~~~~~~~a----~~~~~vd~~~~~~ 77 (361)
T cd01318 2 LLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLA----AAKSVVDYGLYFG 77 (361)
T ss_pred CEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCCEEEEEEEE
T ss_conf 898368487241469999775150999999998489538998999989989999999999973----5588104888862
Q ss_pred ECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC------------
Q ss_conf 27899988998744068721022104551002565410068899999999873982220257555554------------
Q gi|254781012|r 77 LTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI------------ 144 (349)
Q Consensus 77 lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~------------ 144 (349)
T Consensus 78 ~t~~~~~~~l~~~g----~~~~k~f~~~~~---~~~~~~~~~l~---~~~~~~~~~v~~H~Ed~~~~~~~~~~~~~~~~~ 147 (361)
T cd01318 78 VTGSEDLEELDKAP----PAGYKIFMGDST---GDLLDDEETLE---RIFAEGSVLVTFHAEDEDRLRENRKELKGESAH 147 (361)
T ss_pred ECCCCHHHHHHHHH----HCCEEEEEECCC---CCCCHHHHHHH---HHHHHCCCEEEEECCCHHHHHCCHHCCCCCCCC
T ss_conf 04751489999734----164458860578---75102399999---999707995999268988884301033431235
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCC
Q ss_conf -30014676545789999962069539970578589999987057-3320230231003978861378883113213469
Q gi|254781012|r 145 -DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT-NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPK 222 (349)
Q Consensus 145 -~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak-~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR 222 (349)
T Consensus 148 ~~~~p~~aE~~av~r~l~la~~~g~~~hi~hvSt~~~l~~i~~a~~~vt~et~ph~L~l~~~~~~~--~~~~~k~~PPLR 225 (361)
T cd01318 148 PRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAKPGVTVEVTPHHLFLDVEDYDR--LGTLGKVNPPLR 225 (361)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHCCCHHHHCC--CCCCEEECCCCC
T ss_conf 678989999999999999999859968999408899999999759996588523654278134315--687166359989
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC--CCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHC
Q ss_conf 99999999999976994189713888653133215457--75445436799999999-7206999999999824317881
Q gi|254781012|r 223 REKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG--CAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWY 299 (349)
Q Consensus 223 ~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~--~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~ 299 (349)
T Consensus 226 ~~~dr~aL~~~l~~G~I-d~i~SDH~P~~~~~K~~~f~~a~~Gi~g~e~~l~l~~~lv~~g~l~l~~~v~~~s~nPAki~ 304 (361)
T cd01318 226 SREDRKALLQALADGRI-DVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIF 304 (361)
T ss_pred CHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 77899999999865996-49972898889898368977577875109889999999987288149999999968899994
Q ss_pred CCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 8898-------885289994797178471122677771465797698338887
Q gi|254781012|r 300 GIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 300 gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
T Consensus 305 gl~~kG~i~~G~dADlvl~Dp~~~~~v~~~~~~s~~~~sp~~-G~~l~G~v~~ 356 (361)
T cd01318 305 GIKNKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFE-GFEVTGFPVM 356 (361)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 989888578899377899949997898825463758867837-9888889999