RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus
Liberibacter asiaticus str. psy62]
(349 letters)
>gnl|CDD|30767 COG0418, PyrC, Dihydroorotase [Nucleotide transport and
metabolism].
Length = 344
Score = 474 bits (1221), Expect = e-134
Identities = 177/344 (51%), Positives = 251/344 (72%), Gaps = 3/344 (0%)
Query: 1 MKKISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRIL 60
M+++++R PDDWHLHLRDG +LK V+ T++ F RA++MPN+ PP+ TV DA AYR+RIL
Sbjct: 2 MQELTIRRPDDWHLHLRDGAMLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERIL 61
Query: 61 NALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVM 120
A+P + F+PLMT+YLT++T P+++E+ +++A+KLY AG+TTNS G+ +I+++
Sbjct: 62 KAVPAGHRFTPLMTLYLTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIY 121
Query: 121 PVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG 180
PVLE M+ IGMPL +HGE+ + ++DIFDRE FI+ +L+PLR + P LKI+LEHITT +
Sbjct: 122 PVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFPKLKIVLEHITTKDA 181
Query: 181 IDYVNNA-TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNP 239
++YV +A N+A +IT HHL++NRN + G+ PH +CLPI KRE HR +LR+AA SG+P
Sbjct: 182 VEYVKDANNNLAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHP 241
Query: 240 RFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWY 299
+FFLGTDSAPH S KES+CGCAGI++A AL A++FEEEN L+NLE+F S NG +Y
Sbjct: 242 KFFLGTDSAPHARSRKESACGCAGIFSAPFALPLYAEVFEEENALDNLEAFASDNGPKFY 301
Query: 300 GIPVNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEV 343
G+P N + I+L + E + E I + F L W V
Sbjct: 302 GLPRNDKTITLVKEEWQVP--ESIPFGDDIVVPFRAGETLSWSV 343
>gnl|CDD|73253 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible
interconversion of carbamoyl aspartate to
dihydroorotate, a key reaction in the pyrimidine
biosynthesis. In contrast to the large polyfunctional
CAD proteins of higher organisms, this group of DHOases
is monofunctional and mainly dimeric..
Length = 335
Score = 429 bits (1104), Expect = e-121
Identities = 166/339 (48%), Positives = 233/339 (68%), Gaps = 5/339 (1%)
Query: 4 ISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNAL 63
+++ PDD HLHLRDG +LK VL TA+ F RA+VMPN+ PP+ T DA AYR+RIL A
Sbjct: 1 LTIPRPDDMHLHLRDGAMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAAD 60
Query: 64 PPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123
P +F+PLMT+YLTE T P+++ + ++ +KLY AG+TTNS G+ +++++ PVL
Sbjct: 61 PGP-NFTPLMTLYLTENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVL 119
Query: 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDY 183
E M+ +GMPL +HGE+ + ID+ DRE FI +L+PL + P LKI+LEHITT++ ++Y
Sbjct: 120 EAMQKLGMPLLVHGEVPDFKIDVLDREAKFI-PVLEPLAQRFPKLKIVLEHITTADAVEY 178
Query: 184 VNNA-TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFF 242
V + N+A +IT HHL++ R+ + GLNPH YC P+ KR + R +LRKAA SG+P+FF
Sbjct: 179 VKSCNENVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFF 238
Query: 243 LGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP 302
LG+DSAPH S+KESSCGCAGI++A AL LA++FEE N L+ LE+F S NG +YG+P
Sbjct: 239 LGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFEEHNALDKLEAFASDNGPNFYGLP 298
Query: 303 VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYW 341
N + I+L + + EKI + F L W
Sbjct: 299 PNKKTITLVKEPWKV--PEKIPFGNNGVVPFRAGETLRW 335
>gnl|CDD|38113 KOG2902, KOG2902, KOG2902, Dihydroorotase [Nucleotide transport and
metabolism].
Length = 344
Score = 296 bits (759), Expect = 6e-81
Identities = 139/348 (39%), Positives = 215/348 (61%), Gaps = 16/348 (4%)
Query: 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKN-FRRALVMPNIDPPIITVDDACAYRQRILN 61
++++ PDD H+HLRDG++L V+ +A RA VMPN+ PPI T D A Y++ I+
Sbjct: 4 ELTITQPDDMHVHLRDGDMLHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMK 63
Query: 62 ALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNI-DRVM 120
LP + F LM++YL++ T P+++ + S +++ +KLY AG+TTNS G+ ++ +
Sbjct: 64 -LPSKTTF--LMSLYLSDKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFY 120
Query: 121 PVLERMETIGMPLCIHGEI-LNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSN 179
PV E M+ MPL +HGE+ + D +FD E +F+ +L L + P LKI+LEH TT +
Sbjct: 121 PVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQ-LHQRFPQLKIVLEHCTTMD 179
Query: 180 GIDYVNNAT--NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSG 237
+++V +A ++A ++T HHL++ RN + PH +C P+ KRE R +L KAA SG
Sbjct: 180 AVNFVESAKEGSVAATVTAHHLLLTRND-WQG--QPHNFCKPVAKREIDREALVKAATSG 236
Query: 238 NPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGAT 297
+P+FF G+DSAPH S KESSCGCAG+Y+ AL+ A++F+E L+ L++F S G
Sbjct: 237 SPKFFFGSDSAPHPRSRKESSCGCAGVYSQPFALSYYAKVFDEAGALDKLKAFTSFFGPD 296
Query: 298 WYGIP--VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEV 343
+YG+P N+ KI+LK+ +P + G I F L W+
Sbjct: 297 FYGLPDERNSSKITLKK--EPWKVPDVFNFPFGEIVPFFAGETLQWQP 342
>gnl|CDD|30060 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth..
Length = 374
Score = 53.3 bits (128), Expect = 1e-07
Identities = 65/328 (19%), Positives = 124/328 (37%), Gaps = 46/328 (14%)
Query: 11 DWHLHLRD-----GEILKTVLRDTAKN-FRRALVMPNIDPPIITVDDACAYRQRILNALP 64
D H+HLR+ E L++ + A F + MPN +P I + R +
Sbjct: 18 DLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGI 77
Query: 65 PEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGST--TNSHHGIRNIDRVMPV 122
+T L KG +L + +L AG+ ++ I++ + +
Sbjct: 78 VRVLPIGALTKGL----------KG--EELTEIGELLEAGAVGFSDDGKPIQDAELLRRA 125
Query: 123 LERMETIGMPLCIHGE--------ILNQDIDIFDRELMFIDKI--LDPLRN-----KLPN 167
LE + +P+ +H E ++N+ L I + +
Sbjct: 126 LEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLPGIPPEAETIMVARDLELAEATG 185
Query: 168 LKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKR 223
++ +H++T+ ++ + A + +T HHL+++ A+ + + P +
Sbjct: 186 ARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESY--DTNAKVNPPLRS 243
Query: 224 EKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCA--GIYTARNALNCLAQIFEEE 281
E+ R +L +A G + +D APH D K+ A GI AL L + +
Sbjct: 244 EEDREALIEALKDG-TIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKG 302
Query: 282 NK--LENLESFVSINGATWYGIPVNTRK 307
L +L +S N A G+P +
Sbjct: 303 GLLTLPDLIRALSTNPAKILGLPPGRLE 330
>gnl|CDD|30393 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 51.5 bits (123), Expect = 4e-07
Identities = 72/332 (21%), Positives = 115/332 (34%), Gaps = 58/332 (17%)
Query: 11 DWHLHLRDG-----EILKTVLRDTAK-NFRRALVMPNIDPPIITVDDACAYRQRILNALP 64
D H+H R+ E +T R A + MPN PPI T + +R
Sbjct: 57 DLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSV 116
Query: 65 PEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMP-VL 123
+Y F Y T + + K + ST D V+ L
Sbjct: 117 VDYAF------YGGLTKGNLGKLELTERGVEAGFKGFMDDSTGAL------DDDVLEEAL 164
Query: 124 ERMETIGMPLCIHGEILNQDIDIFDRELMF--IDKILDPLRNKLP--------------- 166
E +G + +H E D D+ +M + L + P
Sbjct: 165 EYAAELGALILVHAE----DDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELAR 220
Query: 167 --NLKIILEHITTSNGIDYVNNA----TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPI 220
++ + HI+T ++ + A + +T HHL+++ I L P
Sbjct: 221 ATGARVHICHISTKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED--LGTLAKVNP- 277
Query: 221 PKREK-HRLSLRKAALSGNPRFFLGTDSAPHWDSSK-----ESSCGCAGIYTARNALNCL 274
P R++ R +L +A G + +D APH K E+ G G+ TA L L
Sbjct: 278 PLRDEEDREALWEALKDGVID-VIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLL--L 334
Query: 275 AQIFEEENKLENLESFVSINGATWYGIPVNTR 306
+ + LE L +S N A +G+P
Sbjct: 335 TLVKKGRLSLERLVELLSTNPARIFGLPPKGA 366
>gnl|CDD|145256 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyse the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 50.7 bits (121), Expect = 6e-07
Identities = 55/316 (17%), Positives = 92/316 (29%), Gaps = 61/316 (19%)
Query: 11 DWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPE 66
D H+HL GE + AK R+ +D P R+ I+ L
Sbjct: 8 DAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSI-PLRKEIMEGLAAA 66
Query: 67 YDFSPLMTIYLTETT--------DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDR 118
P + + L + D IK+ G T ID
Sbjct: 67 PKLEPNVGLLLKGSVGGRAELGEVVIDGAGEEAKAGADLIKVIEDGGKTAKA-----IDG 121
Query: 119 VMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILE-HITT 177
V+P L P H + N ++++ + + L +++ H
Sbjct: 122 VLPALAPH---DPPTVSHEGLKN-EVELAEETE------------EAEKLGLLVHIHAAE 165
Query: 178 SNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSG 237
++G G++ +CL + + L K A SG
Sbjct: 166 ASGE----------------------VNAILGGVDLLAHCLHLDDEA---IELLKEAGSG 200
Query: 238 NPRFFLGTDSAPHWDSSKESSCGCA-GIYTARNALNCLAQIFEEENKLENLESFVSINGA 296
L +S H G A GI + LA++ ++ + +NG
Sbjct: 201 IAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADKGGVVGLGTDGAGLNGK 260
Query: 297 TWYGIPVNTRKISLKR 312
+Y P I R
Sbjct: 261 DFYLDPDGLSPIEALR 276
>gnl|CDD|30061 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family..
Length = 361
Score = 42.6 bits (100), Expect = 2e-04
Identities = 63/329 (19%), Positives = 105/329 (31%), Gaps = 68/329 (20%)
Query: 11 DWHLHLRDGEILKTVLRDTAKNFRRALV--------MPNIDPPIITVDDACAYRQRILNA 62
D H+H R+ + T D R A MPN PP T + A +++ A
Sbjct: 10 DIHVHFREPGL--TYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAE---ALYEKLRLA 64
Query: 63 LPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPV 122
+Y T + + K++ ST +
Sbjct: 65 ---AAKSVVDYGLYFGVT--GSEDLEELDKAPPAGYKIFMGDSTGDLLD-------DEET 112
Query: 123 LERM-ETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLP--------------- 166
LER+ + + H E D D + R +
Sbjct: 113 LERIFAEGSVLVTFHAE----DEDRLRENRKELKGESAHPRIRDAEAAAVATARALKLAR 168
Query: 167 --NLKIILEHITTSNGIDYVNNA-TNIAGSITVHHLIINRNAIFHDG----LNPHYYCLP 219
++ + H++T + + A + +T HHL ++ G +NP P
Sbjct: 169 RHGARLHICHVSTPEELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGTLGKVNP-----P 223
Query: 220 IPKREKHRLSLRKAALSGNPRF-FLGTDSAPHWDSSKE-----SSCGCAGIYTARNALNC 273
+ RE R +L +A G R + +D APH K + G G+ TA +
Sbjct: 224 LRSRE-DRKALLQALADG--RIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLM-- 278
Query: 274 LAQIFEEENKLENLESFVSINGATWYGIP 302
L + + L + S N A +GI
Sbjct: 279 LTLVNKGILSLSRVVRLTSHNPARIFGIK 307
>gnl|CDD|147199 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 270
Score = 35.2 bits (81), Expect = 0.027
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 82 DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDR---VMPVLERMETIGMPLCIHGE 138
P D E + +L F G N H G + P+ E + +G+P+ +H
Sbjct: 78 PPPDPEDAVAELERRLAELGFRGVRLNPHPGGGPLLDPRLDRPIYEALAELGLPVDLHTG 137
Query: 139 ILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEH 174
D + + ++ + + P+LKI+L+H
Sbjct: 138 TGFAGEDTDASQPLLLEGLAR----RFPDLKIVLDH 169
>gnl|CDD|32342 COG2159, COG2159, Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only].
Length = 293
Score = 33.1 bits (75), Expect = 0.11
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 109 SHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNL 168
+ + R+ P+ E E +G+P+ IH + LD + K P L
Sbjct: 136 AQGFYPDDPRLYPIYEAAEELGVPVVIH--TGAGPGGAGLEKGHSDPLYLDDVARKFPEL 193
Query: 169 KIILEH 174
KI+L H
Sbjct: 194 KIVLGH 199
>gnl|CDD|133133 cd06602, GH31_MGAM_SI_GAA, This family includes the following three
closely related glycosyl hydrolase family 31 (GH31)
enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase
(SI), and lysosomal acid alpha-glucosidase (GAA), also
known as acid-maltase. MGAM is one of the two enzymes
responsible for catalyzing the last glucose-releasing
step in starch digestion. SI is implicated in the
digestion of dietary starch and major disaccharides such
as sucrose and isomaltose, while GAA degrades glycogen
in the lysosome, cleaving both alpha-1,4 and alpha-1,6
glucosidic linkages. MGAM and SI are anchored to
small-intestinal brush-border epithelial cells. The
absence of SI from the brush border membrane or its
malfunction is associated with malabsorption disorders
such as congenital sucrase-isomaltase deficiency (CSID).
The domain architectures of MGAM and SI include two
tandem GH31 catalytic domains, an N-terminal domain
found near the membrane-bound end, and a C-terminal
luminal domain. Both of the tandem GH31 domains of MGAM
and SI are included in this family. The domain
architecture of GAA includes an N-terminal TFF (trefoil
factor family) domain in addition to the GH31 catalytic
domain. Deficient GAA expression causes pompe disease,
an autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII).
Length = 339
Score = 31.8 bits (73), Expect = 0.26
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 112 GIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKII 171
G +N+D V V+E M G+PL ++ DID DR F LDP+R +
Sbjct: 19 GYKNVDEVKEVVENMRAAGIPL----DVQWNDIDYMDRRRDF---TLDPVRFPGLKMPEF 71
Query: 172 LEHITTSNGIDYV 184
++ + +NG YV
Sbjct: 72 VDEL-HANGQHYV 83
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 31.5 bits (71), Expect = 0.39
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 11 DWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFS 70
WHL+ R GE+L+ + R T+ V+ I P ++ + A Y N F
Sbjct: 308 RWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFL 367
Query: 71 PLMTIYLTET 80
+M +Y T
Sbjct: 368 -MMLLYCYVT 376
>gnl|CDD|30035 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others..
Length = 275
Score = 30.0 bits (66), Expect = 1.0
Identities = 47/312 (15%), Positives = 83/312 (26%), Gaps = 67/312 (21%)
Query: 11 DWHLHLRDGEI----------------LKTVLRDTAKNFRRAL--------VMPNIDPPI 46
D H+HL + + + DT + L M + PP
Sbjct: 3 DTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPT 62
Query: 47 ITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGST 106
T A + + + I +D E L + ++L G
Sbjct: 63 TTKAAIEAVAEAARAS--AGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLK 120
Query: 107 TNSHHGIRNIDR--VMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNK 164
+ + + VLE +G+P+ IH L + D +
Sbjct: 121 LAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRA----------LEDLVALL 170
Query: 165 LPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKRE 224
++++ H++ + + S+ V L +G
Sbjct: 171 RLGGRVVIGHVSHL-DPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEA----------- 218
Query: 225 KHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKL 284
+ L R LGTD PH + L L ++ L
Sbjct: 219 ------LRRLLELGIRVTLGTDGPPHPLGTDLL-----------ALLRLLLKVLRLGLSL 261
Query: 285 ENLESFVSINGA 296
E +IN A
Sbjct: 262 EEALRLATINPA 273
>gnl|CDD|144585 pfam01048, PNP_UDP_1, Phosphorylase superfamily. Members of this
family include: purine nucleoside phosphorylase (PNP)
Uridine phosphorylase (UdRPase) 5'-methylthioadenosine
phosphorylase (MTA phosphorylase).
Length = 232
Score = 29.3 bits (66), Expect = 1.6
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 187 ATNIAGSIT----VHHLIINRNAIFHDGLNPHYYCLPIPKREKH---------RLSLRKA 233
T AG + L+I +AI DG +P P+ R L++A
Sbjct: 75 RTGTAGGLNPDLKPGDLVIPTDAINFDGTSPLTGPNDGPRFPDMAPAPYDPELRALLKEA 134
Query: 234 ALSGNPRFFLG---TDSAPHWDSSKES 257
A G T ++++ E
Sbjct: 135 AERLGIPVHRGVYATTDGFYFETPAEI 161
>gnl|CDD|36513 KOG1299, KOG1299, KOG1299, Vacuolar sorting protein VPS45/Stt10
(Sec1 family) [Intracellular trafficking, secretion, and
vesicular transport].
Length = 549
Score = 28.7 bits (64), Expect = 2.5
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 94 LVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCI-HGEILNQDIDIFD---- 148
LV + K Y S G++ + +L++ T + +CI E+L +++ +F+
Sbjct: 3 LVSSSKKYIEKMIQESGPGMKVL-----LLDKETTPIVSMCITQSELLQKEVYLFERIDN 57
Query: 149 --RELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHL------- 199
RE + K + +R N+++++E + +Y +NI + L
Sbjct: 58 KSRERIKHLKCVVFIRPTPENIQLLIEELRNPRYGEYHLYFSNIISKSDLERLAESDEQE 117
Query: 200 -IINRNAIFHDGL--NPHYYCLPIPKREKHRLSLRKAALS 236
+ I+ D NP + L IP + L+ AL+
Sbjct: 118 VVREVQEIYLDFFKVNPDLFSLNIPHIFESSLNWDPGALT 157
>gnl|CDD|58497 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like
subfamily of SGNH-hydrolases. Platelet-activating factor
(PAF) and PAF-AH are key players in inflammation and in
atherosclerosis. PAF-AH is a calcium independent
phospholipase A2 which exhibits strong substrate
specificity towards PAF, hydrolyzing an acetyl ester at
the sn-2 position. PAF-AH also degrades a family of
oxidized PAF-like phospholipids with short sn-2
residues. In addition, PAF and PAF-AH are associated
with neural migration and mammalian reproduction..
Length = 214
Score = 27.5 bits (61), Expect = 5.2
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 20/81 (24%)
Query: 154 IDKILDPLRNKLPNLKIILEHI----TTSNGIDYVNNATN------IAGSITVHHLIIN- 202
I I++ +R KLPN KI+L + N + N N G V L I+
Sbjct: 115 ILAIVEEIREKLPNAKILLLGLLPRGQNPNPLRERNAQVNRLLAVRYDGLPNVTFLDIDK 174
Query: 203 ---------RNAIFHDGLNPH 214
+ D L+
Sbjct: 175 GFVQSDGTISHHDMPDYLHLT 195
>gnl|CDD|35703 KOG0482, KOG0482, KOG0482, DNA replication licensing factor, MCM7
component [Replication, recombination and repair].
Length = 721
Score = 26.9 bits (59), Expect = 9.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 ETTDPDDVEKG--FTSQLVQAIKLYFAGSTTNSHHGIRNI 116
ET DP+ +K F S+L++ +LYF + N + +R +
Sbjct: 113 ETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREV 152
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,522,031
Number of extensions: 245273
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 20
Length of query: 349
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 254
Effective length of database: 4,210,882
Effective search space: 1069564028
Effective search space used: 1069564028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)