Query gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 302
No_of_seqs 124 out of 144
Neff 3.0
Searched_HMMs 23785
Date Tue May 31 23:46:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781013.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iyv_A Shikimate kinase, SK; t 79.4 1.3 5.6E-05 22.8 3.3 33 159-191 148-180 (184)
2 2kgr_A Intersectin-1; structur 48.4 4.8 0.0002 19.3 1.0 66 138-205 19-92 (111)
3 1zza_A Stannin, AG8_1; helix, 20.8 39 0.0016 13.7 2.5 15 275-289 24-38 (90)
4 1iq3_A Ralbp1-interacting prot 18.8 7.1 0.0003 18.3 -2.3 41 141-182 30-70 (110)
5 1p6r_A Penicillinase repressor 17.6 44 0.0019 13.3 1.6 34 101-136 7-40 (82)
6 2k4b_A Transcriptional regulat 16.0 28 0.0012 14.5 0.2 34 102-137 34-67 (99)
7 1fr2_A Colicin E9 immunity pro 16.0 50 0.0021 13.0 1.8 54 103-175 13-73 (86)
8 1qjt_A EH1, epidermal growth f 15.1 36 0.0015 13.9 0.6 49 134-183 12-60 (99)
9 2ia1_A BH3703 protein; unknown 14.5 42 0.0018 13.4 0.8 19 64-82 118-136 (178)
10 2wpt_A Colicin-E2 immunity pro 14.1 56 0.0023 12.7 4.7 55 103-175 13-73 (86)
No 1
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.40 E-value=1.3 Score=22.81 Aligned_cols=33 Identities=36% Similarity=0.411 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 157878988999985324333774205677899
Q gi|254781013|r 159 ADGSNISPENVVEQIKKPVRFDSDSEFATLESQ 191 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (302)
-|.++.+|+.+|++|-+-.+-++.||-||||..
T Consensus 148 Idt~~~t~eevv~~Il~~l~~~~~~~~~~~~~~ 180 (184)
T 2iyv_A 148 VDTNRRNPGAVVRHILSRLQVPSPSEAATLEHH 180 (184)
T ss_dssp EECSSSCHHHHHHHHHTTSCCCCTTHHHHHHCC
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 989999999999999999748898665640002
No 2
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=48.37 E-value=4.8 Score=19.35 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC-----HHH---HHHHHHHHHHHCCCHHHHH
Q ss_conf 1687787864202199866411578789889999853243337742-----056---7789998445407958888
Q gi|254781013|r 138 LYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSDS-----EFA---TLESQLVKGFKSMPPQLTK 205 (302)
Q Consensus 138 aYDP~dp~~N~~ItvE~itk~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~ 205 (302)
.|+-.|+.++..|+.++...+-..++++ ..++++|-.-+-.|.|. ||+ -|-.+..+|. ..|+.|..
T Consensus 19 ~F~~~D~d~~G~i~~~e~~~~l~~s~L~-~~~L~~Iw~l~D~d~dG~L~~~EF~~am~Li~~~~~G~-~lP~~LP~ 92 (111)
T 2kgr_A 19 LFNSHDKTMSGHLTGPQARTILMQSSLP-QAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSGQ-PLPPVLPP 92 (111)
T ss_dssp HHHTTSCSSCCEEEHHHHHHHHHTTCCC-HHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTC-CCCSSCCG
T ss_pred HHHHHCCCCCCCEEHHHHHHHHHHHCCC-HHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC-CCCCCCCC
T ss_conf 9998689999857078898889872889-99999999976679998087999999999999998799-99977880
No 3
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=20.76 E-value=39 Score=13.67 Aligned_cols=15 Identities=33% Similarity=0.844 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 998999999999986
Q gi|254781013|r 275 VVSLSAIICGFWAIV 289 (302)
Q Consensus 275 ~~~~~~~~~~~~~~~ 289 (302)
+..|+|.|||.|...
T Consensus 24 iaalg~li~~cwcyl 38 (90)
T 1zza_A 24 IAALGALILGCWCYL 38 (90)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999889999999999
No 4
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=18.78 E-value=7.1 Score=18.28 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 778786420219986641157878988999985324333774
Q gi|254781013|r 141 PNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSD 182 (302)
Q Consensus 141 P~dp~~N~~ItvE~itk~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (302)
..|+..+..|+.++....--.++++.+ .+++|-.-+-.|.|
T Consensus 30 ~~D~d~~G~is~~e~~~~l~~s~l~~~-~L~~iw~l~D~d~d 70 (110)
T 1iq3_A 30 SLQPDPSSFISGSVAKNFFTKSKLSIP-ELSYIWELSDADCD 70 (110)
T ss_dssp HHCCSSSSEEEHHHHHHHCCSSSCSSC-CHHHHHHHHCSSSC
T ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHCCCCC
T ss_conf 859988987618899999987039999-99999997567999
No 5
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=17.63 E-value=44 Score=13.32 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH
Q ss_conf 898899999999998448998999996518887621
Q gi|254781013|r 101 ANQEIGEIMESIWNKYQSHSTEQLQEIVQEENKTWR 136 (302)
Q Consensus 101 ~DeEi~eILD~VWnkYG~ySA~qLeeLTHqEnSPWk 136 (302)
+++...+|++-+|+ .|.-++.++.+...++ .+|.
T Consensus 7 Lt~~E~~VM~~lW~-~~~~t~~ei~~~l~~~-~~~~ 40 (82)
T 1p6r_A 7 ISDAELEVMKVIWK-HSSINTNEVIKELSKT-STWS 40 (82)
T ss_dssp CCHHHHHHHHHHHT-SSSEEHHHHHHHHHHH-SCCC
T ss_pred CCHHHHHHHHHHHC-CCCCCHHHHHHHHHCC-CCCC
T ss_conf 99999999999981-7997899999986023-6972
No 6
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=16.04 E-value=28 Score=14.54 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHH
Q ss_conf 988999999999984489989999965188876212
Q gi|254781013|r 102 NQEIGEIMESIWNKYQSHSTEQLQEIVQEENKTWRR 137 (302)
Q Consensus 102 DeEi~eILD~VWnkYG~ySA~qLeeLTHqEnSPWkk 137 (302)
++.+.++++-+|+. |..++.++.+...++ .+|..
T Consensus 34 S~~E~~VM~iLW~~-~~~t~~eI~~~l~~~-~~~~~ 67 (99)
T 2k4b_A 34 SNAELIVMRVIWSL-GEARVDEIYAQIPQE-LEWSL 67 (99)
T ss_dssp CCSCSHHHHHHHHH-SCEEHHHHHHTCCGG-GCCCH
T ss_pred CHHHHHHHHHHHHC-CCCCHHHHHHHHHHC-CCCCH
T ss_conf 99999999999907-995899999998501-38655
No 7
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=15.97 E-value=50 Score=12.99 Aligned_cols=54 Identities=28% Similarity=0.466 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHH-------HHHHCCCCCCCHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 8899999999998448998999-------996518887621216877878642021998664115787898899998532
Q gi|254781013|r 103 QEIGEIMESIWNKYQSHSTEQL-------QEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175 (302)
Q Consensus 103 eEi~eILD~VWnkYG~ySA~qL-------eeLTHqEnSPWkkaYDP~dp~~N~~ItvE~itk~~~~~~~~~~~~~~~~~~ 175 (302)
+|-.++|..+|+.-.. +..++ +.||--+ .-+.=.|-|.+ |..-|||+||+.||+
T Consensus 13 ~EFl~fl~~i~~~~~~-~e~~~~~lv~hF~~iteHP-~gsDLIfYP~~-----------------~~edsPegI~~~IKe 73 (86)
T 1fr2_A 13 AEFLQLVTTICNADTS-SEEELVKLVTHFAEMTEHP-SGSDLIYYPKE-----------------GDDDSPSGIVNTVKQ 73 (86)
T ss_dssp HHHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHCCT-TTTHHHHSCCT-----------------TCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCC-CCCCEEEECCC-----------------CCCCCHHHHHHHHHH
T ss_conf 9999999999966898-7999999999999972599-98852562899-----------------887898999999999
No 8
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=15.09 E-value=36 Score=13.89 Aligned_cols=49 Identities=8% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 62121687787864202199866411578789889999853243337742
Q gi|254781013|r 134 TWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSDS 183 (302)
Q Consensus 134 PWkkaYDP~dp~~N~~ItvE~itk~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (302)
-+++.|+--|+..+..|+.++...+--.++++ +.++++|-.-+-.|.|.
T Consensus 12 ~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~L~-~~~l~~i~~~~D~d~dG 60 (99)
T 1qjt_A 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP-DLILGKIWDLADTDGKG 60 (99)
T ss_dssp HHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC-HHHHHHHHHHHCCSSSS
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCC
T ss_conf 99999999788997959799999999981875-99999999972789999
No 9
>2ia1_A BH3703 protein; unknown function, structural genomics, PSI, protein structure initiative; 1.59A {Bacillus halodurans} SCOP: d.359.1.1 PDB: 3i0t_A
Probab=14.49 E-value=42 Score=13.44 Aligned_cols=19 Identities=5% Similarity=0.101 Sum_probs=7.3
Q ss_pred EECCCCCCHHHHHHHHHCC
Q ss_conf 7456881699999985135
Q gi|254781013|r 64 AWKQGPVFVGVYHRFKYFD 82 (302)
Q Consensus 64 AW~yGPVvP~VY~~FK~yg 82 (302)
+|.+||+-+..|-.||.+|
T Consensus 118 ~s~~~~~~r~~~w~YK~fG 136 (178)
T 2ia1_A 118 KNPFDTFLTRLAWQYEHFG 136 (178)
T ss_dssp CCCSCHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHCC
T ss_conf 7888808889999999719
No 10
>2wpt_A Colicin-E2 immunity protein; immune system, nuclease, antimicrobial, bacteriocin immunity hydrolase, antibiotic, endonuclease; 1.78A {Escherichia coli} PDB: 2no8_A
Probab=14.07 E-value=56 Score=12.67 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHCCCCH------HHHHHHHCCCCCCCHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 8899999999998448998------999996518887621216877878642021998664115787898899998532
Q gi|254781013|r 103 QEIGEIMESIWNKYQSHST------EQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175 (302)
Q Consensus 103 eEi~eILD~VWnkYG~ySA------~qLeeLTHqEnSPWkkaYDP~dp~~N~~ItvE~itk~~~~~~~~~~~~~~~~~~ 175 (302)
+|-.++|..+|+.-+.-.. ...+.+|--++ -+.=.|-|.+ |..-|||+||+.||+
T Consensus 13 ~EFl~fl~~i~~~~~~~e~~~d~lv~hF~~iteHP~-gsDLIfYP~~-----------------~~edsPegI~~~IKe 73 (86)
T 2wpt_A 13 AEFLEFVKKIARAEGATECDDNKLVREFERLTEHPD-GSDLIYYPRD-----------------DREDSPEGIVKEIKE 73 (86)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHCCTT-TTHHHHSCCT-----------------TSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEECCC-----------------CCCCCHHHHHHHHHH
T ss_conf 999999999996679978889999999999804999-8852563899-----------------887898999999999
Done!