RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781013|ref|YP_003065426.1| phage-associated protein
[Candidatus Liberibacter asiaticus str. psy62]
(302 letters)
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} (A:1-97)
Length = 97
Score = 26.8 bits (59), Expect = 3.4
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 94 FRIFP------KIANQEIGEIMESIWNKYQS-HSTEQLQEIVQEENKTWRRLYDPNDPNT 146
F F I + + ++M + S + + WR L D N
Sbjct: 14 FDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINK 73
Query: 147 NRTITVEEITKM 158
+ ++ EE M
Sbjct: 74 DDVVSWEEYLAM 85
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid
biosynthesis, malonyl/palmitoyl transferase,
phosphopantetheine, transferase; HET: GVL FMN; 3.10A
{Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
(G:330-491)
Length = 162
Score = 26.7 bits (58), Expect = 4.0
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 118 SHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPV 177
SH +++ ++ ++ D T + +IS V I+ PV
Sbjct: 96 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 155
Query: 178 RFD 180
+++
Sbjct: 156 KWE 158
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium
binding-protein, EF-hand, calcium ION, metal binding
protein; HET: 1PE P6G; 1.90A {Homo sapiens} (A:1-95)
Length = 95
Score = 26.1 bits (57), Expect = 5.4
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 114 NKYQSHSTEQLQEIV------QEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPE 167
E ++E+ ++E + W + + + P+ + P
Sbjct: 3 KSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPT 62
Query: 168 NVVEQIKKPVRFDSD-------SEFATLESQLVKG 195
+ FD + SEF S +G
Sbjct: 63 KFATFVFN--VFDENKDGRIEFSEFIQALSVTSRG 95
>3dxl_A Allergen AED A 2; odorant-binding protein, all-helical,
secreted; 1.30A {Aedes aegypti} PDB: 3dy9_A 3dye_A*
3dzt_A* (A:148-303)
Length = 156
Score = 25.7 bits (56), Expect = 6.8
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 125 QEIVQEENKTWRRLYDPNDPNTNRTI--TVEEITKMADGSNISPENVVEQIKKP 176
+++ R+ +D ++ I + + + E V K
Sbjct: 18 GSDKRQQLCQIRQYTVLDDALFKEHTDCVMKGIRYITKDNQLDVEEVKRDFKLV 71
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics,
JCSG, protein structure initiative, PSI; HET: NAD; 2.30A
{Caenorhabditis elegans} (A:1-74,A:461-537)
Length = 151
Score = 25.6 bits (56), Expect = 7.9
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 159 ADGSNISP---ENVVEQIKKPVRFDSDSEFATLES 190
ADG +++P + + + KPV + D E+ S
Sbjct: 54 ADGLHVTPKEHDYSFKTVLKPVSYKVDDEYKPFHS 88
>2bbh_A Divalent cation transport-related protein; transporter, Mg,
membrane, structural genomics, structural genomics
consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima}
(A:1-147)
Length = 147
Score = 25.6 bits (56), Expect = 8.0
Identities = 4/51 (7%), Positives = 13/51 (25%), Gaps = 8/51 (15%)
Query: 119 HSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENV 169
E + TW + + + + ++ + P +
Sbjct: 48 TDVESVLPFRDSSTPTWINITGIHRT--------DVVQRVGEFFGTHPLVL 90
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A (A:1-181,A:369-407)
Length = 220
Score = 25.7 bits (56), Expect = 8.7
Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 165 SPENVVEQIKKPVRFDSD-SEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARS 223
S + +++ K +F ++ + P + + E + D +++
Sbjct: 88 SLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQN 147
Query: 224 IQE 226
+Q
Sbjct: 148 VQY 150
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} (A:98-185)
Length = 88
Score = 25.7 bits (56), Expect = 8.8
Identities = 7/91 (7%), Positives = 18/91 (19%), Gaps = 19/91 (20%)
Query: 126 EIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSD--- 182
++ L+ D + + + +EE + +V
Sbjct: 1 DLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNV---ITDGGKV 57
Query: 183 ----SEFATL---------ESQLVKGFKSMP 200
+ + L P
Sbjct: 58 TFDLNRYKELYYRLLTSPAADAGNTLMGQKP 88
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand
domain, POB1 EH domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
(A:)
Length = 110
Score = 25.4 bits (55), Expect = 9.4
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 8/102 (7%)
Query: 114 NKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQI 173
+ S ++ I +E+ + + + P+ + I+ S +S + I
Sbjct: 3 LQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPE-LSYI 61
Query: 174 KKPVRFDSD-----SEFATLESQLVKGFKSMPPQLTKEFQEA 210
+ D D EF +V P +
Sbjct: 62 WELSDADCDGALTLPEFCAAFHLIVARKNGYPLP--EGLPPT 101
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,288,017
Number of extensions: 100952
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 23
Length of query: 302
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 214
Effective length of database: 1,981,209
Effective search space: 423978726
Effective search space used: 423978726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)