RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str. psy62] (302 letters) >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 33.7 bits (76), Expect = 0.051 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 26/86 (30%) Query: 58 LDEEPQA---WKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWN 114 L +EP++ W++ R + D+ +M+ +R + A +++ E WN Sbjct: 80 LTQEPESIRKWREEQ-----RKRLQELDA--ASKVMEQEWR---EKAKKDLEE-----WN 124 Query: 115 KYQSHSTEQLQEIVQEENKTWRRLYD 140 + QS EQ+ E+NK R+ D Sbjct: 125 QRQS---EQV-----EKNKINNRIAD 142 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.1 bits (70), Expect = 0.32 Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 77/198 (38%) Query: 67 QGPV---FVGVYHRFKYFDSHPIEVIMDLSFRI-------FPK-----------IANQEI 105 QG V + ++ F + I + F I +P + N E Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE- 332 Query: 106 GEI--MESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSN 163 G M SI + + EQ+Q+ V + N L P + + + + N Sbjct: 333 GVPSPMLSI----SNLTQEQVQDYVNKTNS---HL--PAG----KQVEISLV-------N 372 Query: 164 ISPENVVEQIKKPVRFDSDSEFATLESQLVK-----G-------FKSMPPQLTKEF---- 207 +N+V + P + S + L L K G F + + F Sbjct: 373 -GAKNLV--VSGPPQ----SLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424 Query: 208 --------QEAQVQIKKD 217 A I KD Sbjct: 425 SPFHSHLLVPASDLINKD 442 >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Score = 30.8 bits (69), Expect = 0.36 Identities = 14/64 (21%), Positives = 21/64 (32%) Query: 116 YQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175 + S+ E + + +E K R P T E + S E V + Sbjct: 684 FHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVS 743 Query: 176 PVRF 179 PV F Sbjct: 744 PVLF 747 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.37 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Query: 202 QLTKEFQEAQVQI-KKDSAIARSIQES 227 Q K+ Q A +++ DSA A +I+ + Sbjct: 20 QALKKLQ-ASLKLYADDSAPALAIKAT 45 >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3ku2_A* 3hx4_A* Length = 484 Score = 31.0 bits (70), Expect = 0.37 Identities = 14/131 (10%), Positives = 45/131 (34%), Gaps = 20/131 (15%) Query: 78 FKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESI-WNKYQS-HSTE------QLQEIVQ 129 + + + + E+ ++++++ ++K +E + ++ Sbjct: 357 LIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLS 416 Query: 130 EENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSDS------ 183 E R + D + + I+ E+ + S++ E + + D ++ Sbjct: 417 RER--LERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSE---VDKNNDGEVDF 471 Query: 184 -EFATLESQLV 193 EF + +L Sbjct: 472 DEFQQMLLKLC 482 >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Length = 184 Score = 30.3 bits (67), Expect = 0.61 Identities = 25/149 (16%), Positives = 42/149 (28%), Gaps = 9/149 (6%) Query: 43 YLTHCDVVLQKKKSMLDEEPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIAN 102 + + E+ + V S + R Sbjct: 37 IEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHT 96 Query: 103 QEIGEIMESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNR--TITVEEITKMAD 160 EI + + +T + + + +R L P R T+ V D Sbjct: 97 VVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRV-------D 149 Query: 161 GSNISPENVVEQIKKPVRFDSDSEFATLE 189 + +P VV I ++ S SE ATLE Sbjct: 150 TNRRNPGAVVRHILSRLQVPSPSEAATLE 178 >1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Length = 167 Score = 29.5 bits (66), Expect = 0.99 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 33/123 (26%) Query: 90 MDLSFRIFPKIANQ-------EIGEIMES--IWNKYQSHSTEQLQEIVQE---------- 130 MD + F +A Q E+ + I Y+ + E + +V Sbjct: 1 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60 Query: 131 ---------ENKTWRRLYDPNDPNTNRTITVEEITKMAD--GSNISPENVVEQIKKPVRF 179 WR+ + D + + T+ +E+ K G ++P+ V K R+ Sbjct: 61 FNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK---RY 117 Query: 180 DSD 182 + Sbjct: 118 STS 120 >1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.1.10.1 Length = 260 Score = 29.1 bits (65), Expect = 1.1 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 124 LQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175 ++ ++E +R Y + +E++ + +N+ P + IKK Sbjct: 14 IEYRIEEAVAKYREFY--EFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKK 63 >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494 Score = 29.2 bits (65), Expect = 1.2 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Query: 124 LQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSD- 182 + ++ ++ + D + N I+V+E+ + ++ + E I + ++D Sbjct: 419 RKSLLSKDK--LESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISG-IDSNNDG 475 Query: 183 ----SEFATLESQL 192 EF + +L Sbjct: 476 DVDFEEFCKMIQKL 489 >1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6 Length = 110 Score = 29.2 bits (65), Expect = 1.3 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 12/102 (11%) Query: 117 QSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKP 176 S ++ I +E+ + + + P+ + I+ S + + I + Sbjct: 6 NSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKL-SIPELSYIWEL 64 Query: 177 VRFDSD-----SEFAT---LESQLVKGF---KSMPPQLTKEF 207 D D EF L G+ + +PP L EF Sbjct: 65 SDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQPEF 106 >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Score = 27.8 bits (61), Expect = 2.9 Identities = 11/65 (16%), Positives = 20/65 (30%) Query: 116 YQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175 + S+ E + + + + P T E + + S E V + Sbjct: 682 FHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLVS 741 Query: 176 PVRFD 180 PV F Sbjct: 742 PVLFQ 746 >2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Score = 27.9 bits (61), Expect = 3.2 Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 9/131 (6%) Query: 162 SNISPENVVEQIKKPVRFDSDSEFATLESQLVKGFKSMPPQ-LTKEFQEAQVQIKKDSAI 220 I + ++++KK V D + +L + + + LT + + +++ Sbjct: 29 DKIDKKRDLDELKKEVSMD---DHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSL 85 Query: 221 ARSIQESNIMRFAYSNRSFWVTIVWITIIVAFLLTQI----INSNVFAQLCESKYIATVV 276 ++F + ++WI I+ FL I + L ++TVV Sbjct: 86 TPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVV 145 Query: 277 SLSAIICGFWA 287 ++ ++ Sbjct: 146 IVTGCF-SYYQ 155 >2qo3_A Eryaii erythromycin polyketide synthase modules 3 and 4; ketosynthase, acyltransferase, phosphopantetheine; 2.59A {Saccharopolyspora erythraea} Length = 915 Score = 27.8 bits (61), Expect = 3.2 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 118 SHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPV 177 SHS Q++ + +E +T + P TVE ++ DG+ + +++ V Sbjct: 728 SHS-PQIERVREELLETTGDI-APRPARVTFHSTVE--SRSMDGTELDARYWYRNLRETV 783 Query: 178 RFD 180 RF Sbjct: 784 RFA 786 >3igo_A Calmodulin-domain protein kinase 1; parasite, calcium, CDPK, structural genomics, structural genomics consortium, SGC; HET: ANP SRT; 2.25A {Cryptosporidium parvum iowa II} Length = 486 Score = 27.2 bits (60), Expect = 5.1 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 12/101 (11%) Query: 94 FRIFPKIANQEIGEIMESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVE 153 + P + G I +Y + + + R + D + + I+ + Sbjct: 384 DSLMPLLDMDGSGSI------EYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTK 437 Query: 154 EITK-MADGSNISPENVVEQIKKPVRFDSD-----SEFATL 188 E+ K + + +E I + V + D +EF + Sbjct: 438 ELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478 >1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Length = 323 Score = 27.1 bits (59), Expect = 5.3 Identities = 13/127 (10%), Positives = 41/127 (32%), Gaps = 4/127 (3%) Query: 51 LQKKKSMLDEEPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIME 110 L+ + + ++E +A V + F + E K + + +E Sbjct: 42 LEAQIAQKEQEQKAKLA-EYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLE 100 Query: 111 SIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMAD--GSNISPEN 168 + Y + +E+ R+L+ + + + + +++ ++ I Sbjct: 101 DDASGYNR-LRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGP 159 Query: 169 VVEQIKK 175 + + Sbjct: 160 LKKLFVM 166 >3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Length = 316 Score = 26.9 bits (59), Expect = 5.3 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 118 SHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPV 177 L ++++E+ ++ ++ D V + + N+V+Q+ PV Sbjct: 204 GPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVN--AQGETDKEVIKSNMVKQLYSPV 261 Query: 178 RFD 180 +F Sbjct: 262 QFI 264 >3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Length = 255 Score = 26.8 bits (58), Expect = 5.6 Identities = 5/23 (21%), Positives = 12/23 (52%) Query: 205 KEFQEAQVQIKKDSAIARSIQES 227 +E Q + +++D R +Q + Sbjct: 4 RELQASLNLLQEDQNAGRQVQMN 26 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 26.3 bits (57), Expect = 7.9 Identities = 8/25 (32%), Positives = 14/25 (56%) Query: 108 IMESIWNKYQSHSTEQLQEIVQEEN 132 I ++N Y E +QE++ EE+ Sbjct: 907 IEPELFNGYNPEKKEMIQEVIVEED 931 >3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A Length = 1034 Score = 26.3 bits (57), Expect = 8.3 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 220 IARSIQESNIMRFAYSNRSFWVTIVWITIIVAFLLTQI 257 I ++ + S + + NR + IV + + L Sbjct: 946 IRKTRRLSAFQQGFFRNRILVIAIV-FQVCIGCFLCYC 982 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Length = 738 Score = 26.1 bits (57), Expect = 8.9 Identities = 12/33 (36%), Positives = 15/33 (45%) Query: 245 WITIIVAFLLTQIINSNVFAQLCESKYIATVVS 277 W TIIV+ I+ S + L E IA S Sbjct: 288 WRTIIVSDDARNILASRITLNLNEPCKIADAAS 320 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.134 0.397 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,604,946 Number of extensions: 118500 Number of successful extensions: 438 Number of sequences better than 10.0: 1 Number of HSP's gapped: 436 Number of HSP's successfully gapped: 37 Length of query: 302 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 210 Effective length of database: 3,462,782 Effective search space: 727184220 Effective search space used: 727184220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.6 bits)