RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781013|ref|YP_003065426.1| phage-associated protein
[Candidatus Liberibacter asiaticus str. psy62]
(302 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.7 bits (76), Expect = 0.051
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 26/86 (30%)
Query: 58 LDEEPQA---WKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWN 114
L +EP++ W++ R + D+ +M+ +R + A +++ E WN
Sbjct: 80 LTQEPESIRKWREEQ-----RKRLQELDA--ASKVMEQEWR---EKAKKDLEE-----WN 124
Query: 115 KYQSHSTEQLQEIVQEENKTWRRLYD 140
+ QS EQ+ E+NK R+ D
Sbjct: 125 QRQS---EQV-----EKNKINNRIAD 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.1 bits (70), Expect = 0.32
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 77/198 (38%)
Query: 67 QGPV---FVGVYHRFKYFDSHPIEVIMDLSFRI-------FPK-----------IANQEI 105
QG V + ++ F + I + F I +P + N E
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE- 332
Query: 106 GEI--MESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSN 163
G M SI + + EQ+Q+ V + N L P + + + + N
Sbjct: 333 GVPSPMLSI----SNLTQEQVQDYVNKTNS---HL--PAG----KQVEISLV-------N 372
Query: 164 ISPENVVEQIKKPVRFDSDSEFATLESQLVK-----G-------FKSMPPQLTKEF---- 207
+N+V + P + S + L L K G F + + F
Sbjct: 373 -GAKNLV--VSGPPQ----SLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 208 --------QEAQVQIKKD 217
A I KD
Sbjct: 425 SPFHSHLLVPASDLINKD 442
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 30.8 bits (69), Expect = 0.36
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 116 YQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175
+ S+ E + + +E K R P T E + S E V +
Sbjct: 684 FHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVS 743
Query: 176 PVRF 179
PV F
Sbjct: 744 PVLF 747
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.37
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 202 QLTKEFQEAQVQI-KKDSAIARSIQES 227
Q K+ Q A +++ DSA A +I+ +
Sbjct: 20 QALKKLQ-ASLKLYADDSAPALAIKAT 45
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3ku2_A*
3hx4_A*
Length = 484
Score = 31.0 bits (70), Expect = 0.37
Identities = 14/131 (10%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 78 FKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESI-WNKYQS-HSTE------QLQEIVQ 129
+ + + + E+ ++++++ ++K +E + ++
Sbjct: 357 LIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLS 416
Query: 130 EENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSDS------ 183
E R + D + + I+ E+ + S++ E + + D ++
Sbjct: 417 RER--LERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSE---VDKNNDGEVDF 471
Query: 184 -EFATLESQLV 193
EF + +L
Sbjct: 472 DEFQQMLLKLC 482
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 30.3 bits (67), Expect = 0.61
Identities = 25/149 (16%), Positives = 42/149 (28%), Gaps = 9/149 (6%)
Query: 43 YLTHCDVVLQKKKSMLDEEPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIAN 102
+ + E+ + V S + R
Sbjct: 37 IEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHT 96
Query: 103 QEIGEIMESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNR--TITVEEITKMAD 160
EI + + +T + + + +R L P R T+ V D
Sbjct: 97 VVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRV-------D 149
Query: 161 GSNISPENVVEQIKKPVRFDSDSEFATLE 189
+ +P VV I ++ S SE ATLE
Sbjct: 150 TNRRNPGAVVRHILSRLQVPSPSEAATLE 178
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 29.5 bits (66), Expect = 0.99
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 33/123 (26%)
Query: 90 MDLSFRIFPKIANQ-------EIGEIMES--IWNKYQSHSTEQLQEIVQE---------- 130
MD + F +A Q E+ + I Y+ + E + +V
Sbjct: 1 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 131 ---------ENKTWRRLYDPNDPNTNRTITVEEITKMAD--GSNISPENVVEQIKKPVRF 179
WR+ + D + + T+ +E+ K G ++P+ V K R+
Sbjct: 61 FNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK---RY 117
Query: 180 DSD 182
+
Sbjct: 118 STS 120
>1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
c.1.10.1
Length = 260
Score = 29.1 bits (65), Expect = 1.1
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 124 LQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175
++ ++E +R Y + +E++ + +N+ P + IKK
Sbjct: 14 IEYRIEEAVAKYREFY--EFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKK 63
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 29.2 bits (65), Expect = 1.2
Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 124 LQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSD- 182
+ ++ ++ + D + N I+V+E+ + ++ + E I + ++D
Sbjct: 419 RKSLLSKDK--LESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISG-IDSNNDG 475
Query: 183 ----SEFATLESQL 192
EF + +L
Sbjct: 476 DVDFEEFCKMIQKL 489
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 29.2 bits (65), Expect = 1.3
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 117 QSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKP 176
S ++ I +E+ + + + P+ + I+ S + + I +
Sbjct: 6 NSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKL-SIPELSYIWEL 64
Query: 177 VRFDSD-----SEFAT---LESQLVKGF---KSMPPQLTKEF 207
D D EF L G+ + +PP L EF
Sbjct: 65 SDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQPEF 106
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.8 bits (61), Expect = 2.9
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 116 YQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175
+ S+ E + + + + P T E + + S E V +
Sbjct: 682 FHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLVS 741
Query: 176 PVRFD 180
PV F
Sbjct: 742 PVLFQ 746
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A
Length = 1028
Score = 27.9 bits (61), Expect = 3.2
Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 162 SNISPENVVEQIKKPVRFDSDSEFATLESQLVKGFKSMPPQ-LTKEFQEAQVQIKKDSAI 220
I + ++++KK V D + +L + + + LT + + +++
Sbjct: 29 DKIDKKRDLDELKKEVSMD---DHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSL 85
Query: 221 ARSIQESNIMRFAYSNRSFWVTIVWITIIVAFLLTQI----INSNVFAQLCESKYIATVV 276
++F + ++WI I+ FL I + L ++TVV
Sbjct: 86 TPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVV 145
Query: 277 SLSAIICGFWA 287
++ ++
Sbjct: 146 IVTGCF-SYYQ 155
>2qo3_A Eryaii erythromycin polyketide synthase modules 3 and 4;
ketosynthase, acyltransferase, phosphopantetheine; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 27.8 bits (61), Expect = 3.2
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 118 SHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPV 177
SHS Q++ + +E +T + P TVE ++ DG+ + +++ V
Sbjct: 728 SHS-PQIERVREELLETTGDI-APRPARVTFHSTVE--SRSMDGTELDARYWYRNLRETV 783
Query: 178 RFD 180
RF
Sbjct: 784 RFA 786
>3igo_A Calmodulin-domain protein kinase 1; parasite, calcium, CDPK,
structural genomics, structural genomics consortium,
SGC; HET: ANP SRT; 2.25A {Cryptosporidium parvum iowa
II}
Length = 486
Score = 27.2 bits (60), Expect = 5.1
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 94 FRIFPKIANQEIGEIMESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVE 153
+ P + G I +Y + + + R + D + + I+ +
Sbjct: 384 DSLMPLLDMDGSGSI------EYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTK 437
Query: 154 EITK-MADGSNISPENVVEQIKKPVRFDSD-----SEFATL 188
E+ K + + +E I + V + D +EF +
Sbjct: 438 ELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 27.1 bits (59), Expect = 5.3
Identities = 13/127 (10%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 51 LQKKKSMLDEEPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIME 110
L+ + + ++E +A V + F + E K + + +E
Sbjct: 42 LEAQIAQKEQEQKAKLA-EYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLE 100
Query: 111 SIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMAD--GSNISPEN 168
+ Y + +E+ R+L+ + + + + +++ ++ I
Sbjct: 101 DDASGYNR-LRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGP 159
Query: 169 VVEQIKK 175
+ +
Sbjct: 160 LKKLFVM 166
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 26.9 bits (59), Expect = 5.3
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 118 SHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPV 177
L ++++E+ ++ ++ D V + + N+V+Q+ PV
Sbjct: 204 GPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVN--AQGETDKEVIKSNMVKQLYSPV 261
Query: 178 RFD 180
+F
Sbjct: 262 QFI 264
>3f79_A Probable two-component response regulator; adaptor, signaling
protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Length = 255
Score = 26.8 bits (58), Expect = 5.6
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 205 KEFQEAQVQIKKDSAIARSIQES 227
+E Q + +++D R +Q +
Sbjct: 4 RELQASLNLLQEDQNAGRQVQMN 26
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.3 bits (57), Expect = 7.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 108 IMESIWNKYQSHSTEQLQEIVQEEN 132
I ++N Y E +QE++ EE+
Sbjct: 907 IEPELFNGYNPEKKEMIQEVIVEED 931
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A
1iwf_A
Length = 1034
Score = 26.3 bits (57), Expect = 8.3
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 220 IARSIQESNIMRFAYSNRSFWVTIVWITIIVAFLLTQI 257
I ++ + S + + NR + IV + + L
Sbjct: 946 IRKTRRLSAFQQGFFRNRILVIAIV-FQVCIGCFLCYC 982
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 26.1 bits (57), Expect = 8.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 245 WITIIVAFLLTQIINSNVFAQLCESKYIATVVS 277
W TIIV+ I+ S + L E IA S
Sbjct: 288 WRTIIVSDDARNILASRITLNLNEPCKIADAAS 320
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,604,946
Number of extensions: 118500
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 37
Length of query: 302
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 210
Effective length of database: 3,462,782
Effective search space: 727184220
Effective search space used: 727184220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)