Query gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 116 No_of_seqs 43 out of 45 Neff 4.3 Searched_HMMs 23785 Date Tue May 31 23:34:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781014.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2pif_A UPF0317 protein pspto_5 59.5 2 8.6E-05 21.8 0.6 19 46-64 47-65 (276) 2 2cmx_A ORF F-112, F112, hypoth 30.8 8 0.00034 18.0 -0.1 17 50-66 51-67 (118) 3 3dl8_E Protein-export membrane 24.3 21 0.0009 15.4 1.1 18 3-20 50-67 (107) 4 1xme_C Cytochrome C oxidase po 22.3 36 0.0015 13.9 2.5 16 4-19 17-32 (34) 5 1gp2_G G protein GI gamma 2; s 20.6 35 0.0015 14.1 1.6 15 45-59 30-44 (71) 6 1q38_A Fibronectin; amyloid fi 18.8 40 0.0017 13.7 1.5 23 94-116 63-85 (89) 7 3mg1_A OCP, orange carotenoid 18.4 44 0.0019 13.4 3.2 49 5-53 105-162 (323) 8 1got_G GT-gamma; complex (GTP- 16.7 48 0.002 13.2 1.6 15 45-59 40-54 (73) 9 3din_E Preprotein translocase 13.9 56 0.0024 12.7 1.3 15 4-18 52-66 (76) 10 2e84_A High-molecular-weight c 11.0 43 0.0018 13.5 0.0 17 6-22 6-22 (556) No 1 >2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structure initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A Probab=59.49 E-value=2 Score=21.78 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHCHHHHH Q ss_conf 9999999998330889999 Q gi|254781014|r 46 SGTVGYASNLCNAKPEICL 64 (116) Q Consensus 46 ~~a~~di~~fC~r~P~~Ce 64 (116) ++-..|...||.|||..|- T Consensus 47 ~~~A~DF~~FC~~NPkpCP 65 (276) T 2pif_A 47 RDWAYDFLLYAQRNPKACP 65 (276) T ss_dssp HHHHHHHHHHHHHCTTTSC T ss_pred HHHHHHHHHHHHHCCCCCC T ss_conf 9999999999976899886 No 2 >2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A Probab=30.83 E-value=8 Score=18.04 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=13.9 Q ss_pred HHHHHHHHHCHHHHHHH Q ss_conf 99999833088999989 Q gi|254781014|r 50 GYASNLCNAKPEICLLW 66 (116) Q Consensus 50 ~di~~fC~r~P~~Ce~G 66 (116) .-+..+|+|.||-||+- T Consensus 51 r~l~~ice~hpdecevq 67 (118) T 2cmx_A 51 RALKAICERHPDECEVQ 67 (118) T ss_dssp HHHHHHHHHCTTTEEEE T ss_pred HHHHHHHHCCCCHHHEE T ss_conf 99999985397365210 No 3 >3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Probab=24.31 E-value=21 Score=15.37 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999643 Q gi|254781014|r 3 WIAKKFFWISVLLIVLSN 20 (116) Q Consensus 3 FLlr~aFWlsLvlvlLp~ 20 (116) ||-|.+.|+..+|+++.. T Consensus 50 ~L~K~T~~la~~F~v~sl 67 (107) T 3dl8_E 50 ILTKATYWLGALFLVLAL 67 (107) T ss_dssp CTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 4 >1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.23.9.1 PDB: 2qpd_C* 2qpe_C* 3bvd_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* Probab=22.28 E-value=36 Score=13.92 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999964 Q gi|254781014|r 4 IAKKFFWISVLLIVLS 19 (116) Q Consensus 4 Llr~aFWlsLvlvlLp 19 (116) |.-..|||++.-|.+- T Consensus 17 l~ilvfw~gv~avf~a 32 (34) T 1xme_C 17 LTILVFWLGVYAVFFA 32 (34) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999999999998750 No 5 >1gp2_G G protein GI gamma 2; signal transduction protein, GTPase, WD40, RAS-like, complex (GTP-binding/transducer); HET: GDP; 2.30A {Bos taurus} SCOP: a.137.3.1 PDB: 1gg2_G* 2bcj_G* 3ah8_G* 1xhm_B 2qns_B 3kj5_B 1omw_G 3cik_G 3krw_G* 3krx_G* Probab=20.60 E-value=35 Score=14.06 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999983308 Q gi|254781014|r 45 TSGTVGYASNLCNAK 59 (116) Q Consensus 45 a~~a~~di~~fC~r~ 59 (116) .+.+..|+..||+.+ T Consensus 30 VSqaaadL~~yc~~~ 44 (71) T 1gp2_G 30 VSKAAADLMAYCEAH 44 (71) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 989999999999962 No 6 >1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Probab=18.77 E-value=40 Score=13.69 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=14.9 Q ss_pred CCCCCCCHHCCCCCCCCCCCCCC Q ss_conf 77765300002556899986679 Q gi|254781014|r 94 KNERESVAIHSKNEYPPPLPSHH 116 (116) Q Consensus 94 ~~~~~~~~~~~~~~~~p~~~s~~ 116 (116) ..+............+|..+||| T Consensus 63 ~s~~s~~~~~Tt~~~~P~~~s~~ 85 (89) T 1q38_A 63 HQEVTRFDFTTTSTSTPGSRSHH 85 (89) T ss_dssp CCCEEEEEECSSSSCCCSCCCCC T ss_pred CCCCEEEEEEECCCCCCCCCCCC T ss_conf 17877568898889998897654 No 7 >3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A* Probab=18.36 E-value=44 Score=13.40 Aligned_cols=49 Identities=16% Similarity=0.039 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHHHHH-HCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999999643-026877744235--------886569999999999999999 Q gi|254781014|r 5 AKKFFWISVLLIVLSN-VYAQPFLEETEK--------GKKTEITDFMTATSGTVGYAS 53 (116) Q Consensus 5 lr~aFWlsLvlvlLp~-~~~~~~~~~~~~--------~p~~~~~da~~Aa~~a~~di~ 53 (116) .|.+||.-|.=-.=-. +.+-|.+-+.+. -++++-.+.++-.+.+|.||| T Consensus 105 tKL~fWY~Lae~M~~G~VipvP~~YqLS~~a~~vl~~Ik~Ldf~QQItvlR~~V~~MG 162 (323) T 3mg1_A 105 IKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMG 162 (323) T ss_dssp HHHHHHHHHHHHHHHTSSCCSCTTCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHTCC T ss_pred CHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf 3348999999885079376179888768789999999972783200779999999728 No 8 >1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G* Probab=16.71 E-value=48 Score=13.17 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999983308 Q gi|254781014|r 45 TSGTVGYASNLCNAK 59 (116) Q Consensus 45 a~~a~~di~~fC~r~ 59 (116) .+.+..|+..||+.+ T Consensus 40 VSqaa~dL~~yce~~ 54 (73) T 1got_G 40 VSKCCEEFRDYVEER 54 (73) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 988899999999954 No 9 >3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP} Probab=13.92 E-value=56 Score=12.75 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=5.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999996 Q gi|254781014|r 4 IAKKFFWISVLLIVL 18 (116) Q Consensus 4 Llr~aFWlsLvlvlL 18 (116) |-|.+.|+..+|+++ T Consensus 52 L~K~T~~lA~~F~i~ 66 (76) T 3din_E 52 GGKITLVLSVLFFVS 66 (76) T ss_dssp TTHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 10 >2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str} Probab=11.04 E-value=43 Score=13.46 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 99999999999964302 Q gi|254781014|r 6 KKFFWISVLLIVLSNVY 22 (116) Q Consensus 6 r~aFWlsLvlvlLp~~~ 22 (116) |+..|+++|+|++-+++ T Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (556) T 2e84_A 6 SLLRWAGALVAVAAVTV 22 (556) T ss_dssp ----------------- T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 37888899999999988 Done!