Query         gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs    43 out of 45
Neff          4.3 
Searched_HMMs 23785
Date          Tue May 31 23:34:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781014.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2pif_A UPF0317 protein pspto_5  59.5       2 8.6E-05   21.8   0.6   19   46-64     47-65  (276)
  2 2cmx_A ORF F-112, F112, hypoth  30.8       8 0.00034   18.0  -0.1   17   50-66     51-67  (118)
  3 3dl8_E Protein-export membrane  24.3      21  0.0009   15.4   1.1   18    3-20     50-67  (107)
  4 1xme_C Cytochrome C oxidase po  22.3      36  0.0015   13.9   2.5   16    4-19     17-32  (34)
  5 1gp2_G G protein GI gamma 2; s  20.6      35  0.0015   14.1   1.6   15   45-59     30-44  (71)
  6 1q38_A Fibronectin; amyloid fi  18.8      40  0.0017   13.7   1.5   23   94-116    63-85  (89)
  7 3mg1_A OCP, orange carotenoid   18.4      44  0.0019   13.4   3.2   49    5-53    105-162 (323)
  8 1got_G GT-gamma; complex (GTP-  16.7      48   0.002   13.2   1.6   15   45-59     40-54  (73)
  9 3din_E Preprotein translocase   13.9      56  0.0024   12.7   1.3   15    4-18     52-66  (76)
 10 2e84_A High-molecular-weight c  11.0      43  0.0018   13.5   0.0   17    6-22      6-22  (556)

No 1  
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structure initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=59.49  E-value=2  Score=21.78  Aligned_cols=19  Identities=11%  Similarity=0.018  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHCHHHHH
Q ss_conf             9999999998330889999
Q gi|254781014|r   46 SGTVGYASNLCNAKPEICL   64 (116)
Q Consensus        46 ~~a~~di~~fC~r~P~~Ce   64 (116)
                      ++-..|...||.|||..|-
T Consensus        47 ~~~A~DF~~FC~~NPkpCP   65 (276)
T 2pif_A           47 RDWAYDFLLYAQRNPKACP   65 (276)
T ss_dssp             HHHHHHHHHHHHHCTTTSC
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999976899886


No 2  
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=30.83  E-value=8  Score=18.04  Aligned_cols=17  Identities=18%  Similarity=0.511  Sum_probs=13.9

Q ss_pred             HHHHHHHHHCHHHHHHH
Q ss_conf             99999833088999989
Q gi|254781014|r   50 GYASNLCNAKPEICLLW   66 (116)
Q Consensus        50 ~di~~fC~r~P~~Ce~G   66 (116)
                      .-+..+|+|.||-||+-
T Consensus        51 r~l~~ice~hpdecevq   67 (118)
T 2cmx_A           51 RALKAICERHPDECEVQ   67 (118)
T ss_dssp             HHHHHHHHHCTTTEEEE
T ss_pred             HHHHHHHHCCCCHHHEE
T ss_conf             99999985397365210


No 3  
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=24.31  E-value=21  Score=15.37  Aligned_cols=18  Identities=28%  Similarity=0.724  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999643
Q gi|254781014|r    3 WIAKKFFWISVLLIVLSN   20 (116)
Q Consensus         3 FLlr~aFWlsLvlvlLp~   20 (116)
                      ||-|.+.|+..+|+++..
T Consensus        50 ~L~K~T~~la~~F~v~sl   67 (107)
T 3dl8_E           50 ILTKATYWLGALFLVLAL   67 (107)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999


No 4  
>1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.23.9.1 PDB: 2qpd_C* 2qpe_C* 3bvd_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C*
Probab=22.28  E-value=36  Score=13.92  Aligned_cols=16  Identities=19%  Similarity=0.671  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999964
Q gi|254781014|r    4 IAKKFFWISVLLIVLS   19 (116)
Q Consensus         4 Llr~aFWlsLvlvlLp   19 (116)
                      |.-..|||++.-|.+-
T Consensus        17 l~ilvfw~gv~avf~a   32 (34)
T 1xme_C           17 LTILVFWLGVYAVFFA   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999998750


No 5  
>1gp2_G G protein GI gamma 2; signal transduction protein, GTPase, WD40, RAS-like, complex (GTP-binding/transducer); HET: GDP; 2.30A {Bos taurus} SCOP: a.137.3.1 PDB: 1gg2_G* 2bcj_G* 3ah8_G* 1xhm_B 2qns_B 3kj5_B 1omw_G 3cik_G 3krw_G* 3krx_G*
Probab=20.60  E-value=35  Score=14.06  Aligned_cols=15  Identities=20%  Similarity=0.268  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999999999983308
Q gi|254781014|r   45 TSGTVGYASNLCNAK   59 (116)
Q Consensus        45 a~~a~~di~~fC~r~   59 (116)
                      .+.+..|+..||+.+
T Consensus        30 VSqaaadL~~yc~~~   44 (71)
T 1gp2_G           30 VSKAAADLMAYCEAH   44 (71)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             989999999999962


No 6  
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=18.77  E-value=40  Score=13.69  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=14.9

Q ss_pred             CCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf             77765300002556899986679
Q gi|254781014|r   94 KNERESVAIHSKNEYPPPLPSHH  116 (116)
Q Consensus        94 ~~~~~~~~~~~~~~~~p~~~s~~  116 (116)
                      ..+............+|..+|||
T Consensus        63 ~s~~s~~~~~Tt~~~~P~~~s~~   85 (89)
T 1q38_A           63 HQEVTRFDFTTTSTSTPGSRSHH   85 (89)
T ss_dssp             CCCEEEEEECSSSSCCCSCCCCC
T ss_pred             CCCCEEEEEEECCCCCCCCCCCC
T ss_conf             17877568898889998897654


No 7  
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=18.36  E-value=44  Score=13.40  Aligned_cols=49  Identities=16%  Similarity=0.039  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHH-HCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999643-026877744235--------886569999999999999999
Q gi|254781014|r    5 AKKFFWISVLLIVLSN-VYAQPFLEETEK--------GKKTEITDFMTATSGTVGYAS   53 (116)
Q Consensus         5 lr~aFWlsLvlvlLp~-~~~~~~~~~~~~--------~p~~~~~da~~Aa~~a~~di~   53 (116)
                      .|.+||.-|.=-.=-. +.+-|.+-+.+.        -++++-.+.++-.+.+|.|||
T Consensus       105 tKL~fWY~Lae~M~~G~VipvP~~YqLS~~a~~vl~~Ik~Ldf~QQItvlR~~V~~MG  162 (323)
T 3mg1_A          105 IKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMG  162 (323)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCSCTTCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             3348999999885079376179888768789999999972783200779999999728


No 8  
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=16.71  E-value=48  Score=13.17  Aligned_cols=15  Identities=7%  Similarity=0.011  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999999999983308
Q gi|254781014|r   45 TSGTVGYASNLCNAK   59 (116)
Q Consensus        45 a~~a~~di~~fC~r~   59 (116)
                      .+.+..|+..||+.+
T Consensus        40 VSqaa~dL~~yce~~   54 (73)
T 1got_G           40 VSKCCEEFRDYVEER   54 (73)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             988899999999954


No 9  
>3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP}
Probab=13.92  E-value=56  Score=12.75  Aligned_cols=15  Identities=33%  Similarity=0.246  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999996
Q gi|254781014|r    4 IAKKFFWISVLLIVL   18 (116)
Q Consensus         4 Llr~aFWlsLvlvlL   18 (116)
                      |-|.+.|+..+|+++
T Consensus        52 L~K~T~~lA~~F~i~   66 (76)
T 3din_E           52 GGKITLVLSVLFFVS   66 (76)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 10 
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Probab=11.04  E-value=43  Score=13.46  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999964302
Q gi|254781014|r    6 KKFFWISVLLIVLSNVY   22 (116)
Q Consensus         6 r~aFWlsLvlvlLp~~~   22 (116)
                      |+..|+++|+|++-+++
T Consensus         6 ~~~~~~~~~~~~~~~~~   22 (556)
T 2e84_A            6 SLLRWAGALVAVAAVTV   22 (556)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             37888899999999988


Done!