Query gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs 43 out of 45
Neff 4.3
Searched_HMMs 13730
Date Wed Jun 1 11:05:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781014.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pifa1 d.382.1.1 (A:7-262) Un 59.7 1.2 8.5E-05 21.8 0.6 19 46-64 41-59 (256)
2 d2vqca1 a.4.5.78 (A:4-73) F-11 35.4 3.5 0.00026 18.8 -0.1 16 50-65 42-57 (70)
3 d1m98a1 a.175.1.1 (A:2-175) Or 24.6 19 0.0014 14.2 2.7 49 5-53 104-161 (174)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 22.9 20 0.0015 14.0 2.5 16 4-19 16-31 (33)
5 d1tbge_ a.137.3.1 (E:) Transdu 20.8 23 0.0016 13.7 2.2 16 44-59 32-47 (68)
6 d1gg2g_ a.137.3.1 (G:) Transdu 12.1 37 0.0027 12.4 1.6 15 45-59 23-37 (54)
7 d1iyjb5 b.40.4.3 (B:2980-3117) 10.2 38 0.0028 12.3 0.7 41 18-58 83-123 (138)
8 d2axtz1 f.17.5.1 (Z:1-62) Phot 9.0 48 0.0035 11.7 2.4 14 16-29 21-34 (62)
9 d2btva_ e.28.1.1 (A:) BTV vp3 7.8 54 0.0039 11.3 0.7 53 10-62 517-571 (845)
10 d1ulza2 c.30.1.1 (A:1-114) Bio 5.7 69 0.0051 10.7 0.6 12 54-65 82-93 (114)
No 1
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=59.72 E-value=1.2 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHCHHHHH
Q ss_conf 9999999998330889999
Q gi|254781014|r 46 SGTVGYASNLCNAKPEICL 64 (116)
Q Consensus 46 ~~a~~di~~fC~r~P~~Ce 64 (116)
++-..|...||.|||..|-
T Consensus 41 ~~~A~DF~~FC~~NPkpCP 59 (256)
T d2pifa1 41 RDWAYDFLLYAQRNPKACP 59 (256)
T ss_dssp HHHHHHHHHHHHHCTTTSC
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999976898887
No 2
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=35.40 E-value=3.5 Score=18.80 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=13.4
Q ss_pred HHHHHHHHHCHHHHHH
Q ss_conf 9999983308899998
Q gi|254781014|r 50 GYASNLCNAKPEICLL 65 (116)
Q Consensus 50 ~di~~fC~r~P~~Ce~ 65 (116)
.-+..+|+|.||-||+
T Consensus 42 r~l~~ice~hpdecev 57 (70)
T d2vqca1 42 RALKAICERHPDECEV 57 (70)
T ss_dssp HHHHHHHHHCTTTEEE
T ss_pred HHHHHHHHCCCCHHHE
T ss_conf 9999998539736521
No 3
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=24.62 E-value=19 Score=14.21 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999643-0268777442358--------86569999999999999999
Q gi|254781014|r 5 AKKFFWISVLLIVLSN-VYAQPFLEETEKG--------KKTEITDFMTATSGTVGYAS 53 (116)
Q Consensus 5 lr~aFWlsLvlvlLp~-~~~~~~~~~~~~~--------p~~~~~da~~Aa~~a~~di~ 53 (116)
.|.+||.-|.=..=-. +.+-|.+-+.+.. .+++-.+.++-.+.+|.|||
T Consensus 104 ~KL~fWY~Lae~M~~G~VipvP~~YqlS~~a~~vl~~I~~Ldf~QQITvlR~~V~~MG 161 (174)
T d1m98a1 104 IKLGFWYELGRFMDQGLVAPIPEGYKLSANANAILVTIQGIDPGQQITVLRNCVVDMG 161 (174)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCTTCCCCHHHHHHHHHHHHSCHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 0679999999886078276279888768889999999873881125999999999828
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=22.91 E-value=20 Score=14.00 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999964
Q gi|254781014|r 4 IAKKFFWISVLLIVLS 19 (116)
Q Consensus 4 Llr~aFWlsLvlvlLp 19 (116)
|.-..|||++.-|.+-
T Consensus 16 l~ilvfw~gv~avf~a 31 (33)
T d1xmec1 16 LTILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999998750
No 5
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.84 E-value=23 Score=13.74 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999983308
Q gi|254781014|r 44 ATSGTVGYASNLCNAK 59 (116)
Q Consensus 44 Aa~~a~~di~~fC~r~ 59 (116)
..+.+..|+..||+.+
T Consensus 32 ~VS~aa~dl~~yce~~ 47 (68)
T d1tbge_ 32 LVSKCCEEFRDYVEER 47 (68)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 5998999999999962
No 6
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.11 E-value=37 Score=12.36 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999983308
Q gi|254781014|r 45 TSGTVGYASNLCNAK 59 (116)
Q Consensus 45 a~~a~~di~~fC~r~ 59 (116)
.+.+..|+..||+.+
T Consensus 23 vS~aa~~l~~y~e~~ 37 (54)
T d1gg2g_ 23 VSKAAADLMAYCEAH 37 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999962
No 7
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.16 E-value=38 Score=12.32 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=27.8
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64302687774423588656999999999999999998330
Q gi|254781014|r 18 LSNVYAQPFLEETEKGKKTEITDFMTATSGTVGYASNLCNA 58 (116)
Q Consensus 18 Lp~~~~~~~~~~~~~~p~~~~~da~~Aa~~a~~di~~fC~r 58 (116)
+|-++.++.+.=+++.+.--.-+.+.-.+.++.|+-.||+.
T Consensus 83 vPtl~Age~s~FS~~PK~~Hlqe~~~~Lk~~i~~id~F~~~ 123 (138)
T d1iyjb5 83 VPTLFAGNFSVFSASPKEAHFQERVTNMKHAIENIDTFYKE 123 (138)
T ss_dssp SCEEEEEEEEEEESSCSSHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86388503322227940879999999999999989999999
No 8
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.97 E-value=48 Score=11.67 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=7.0
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99643026877744
Q gi|254781014|r 16 IVLSNVYAQPFLEE 29 (116)
Q Consensus 16 vlLp~~~~~~~~~~ 29 (116)
|-.|.+++.|++=+
T Consensus 21 VgVPV~~ASP~gW~ 34 (62)
T d2axtz1 21 IGVPVAYASPQDWD 34 (62)
T ss_dssp HHHHHHHHCCTTTT
T ss_pred EECEEEEECCCCCC
T ss_conf 20408998887422
No 9
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId: 40051]}
Probab=7.77 E-value=54 Score=11.35 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999999643026877744235886569--999999999999999983308899
Q gi|254781014|r 10 WISVLLIVLSNVYAQPFLEETEKGKKTEI--TDFMTATSGTVGYASNLCNAKPEI 62 (116)
Q Consensus 10 WlsLvlvlLp~~~~~~~~~~~~~~p~~~~--~da~~Aa~~a~~di~~fC~r~P~~ 62 (116)
|.|+-+-.--.+.+.+.++-....|-++. .+.++.++-.++.+..|-.|+|++
T Consensus 517 ~~SIw~aF~~rf~pt~rs~~l~~aPliESvyas~LS~mkl~~~~l~~f~~~~p~~ 571 (845)
T d2btva_ 517 WISLWFAFNRSFEPTHRNEMLEIAPLIESVYASELSVMKVDMRHLSLMQRRFPDV 571 (845)
T ss_dssp TTHHHHHHTCEEEEEECCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999875078767855666406889999878899999999999998758430
No 10
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=5.69 E-value=69 Score=10.67 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHCHHHHHH
Q ss_conf 983308899998
Q gi|254781014|r 54 NLCNAKPEICLL 65 (116)
Q Consensus 54 ~fC~r~P~~Ce~ 65 (116)
||+.+||++|+.
T Consensus 82 GFLSEna~Fa~~ 93 (114)
T d1ulza2 82 GFLAENAEFAKM 93 (114)
T ss_dssp STTTTCHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 655058999999
Done!