RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62] (78 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.8 bits (59), Expect = 1.2 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 38/80 (47%) Query: 2 FLFFCWI-----------------LSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVS 44 LF +I L ++L N G PSP+ + + ++ Sbjct: 302 VLF--FIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPMLSISN-------------LT 345 Query: 45 KDKGITFKVEKVGDQHNKIL 64 +++ V+ ++ N L Sbjct: 346 QEQ-----VQDYVNKTNSHL 360 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 1.7 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 6/22 (27%) Query: 54 EKVGDQHNKIL---LKEYSSDN 72 EK Q K L LK Y+ D+ Sbjct: 18 EK---QALKKLQASLKLYADDS 36 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.135 0.419 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 654,467 Number of extensions: 23557 Number of successful extensions: 59 Number of sequences better than 10.0: 1 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 4 Length of query: 78 Length of database: 5,693,230 Length adjustment: 47 Effective length of query: 31 Effective length of database: 4,553,762 Effective search space: 141166622 Effective search space used: 141166622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.4 bits)