BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781015|ref|YP_003065428.1| hypothetical protein
CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 78

 Score =  164 bits (414), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH 60
          MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH
Sbjct: 1  MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH 60

Query: 61 NKILLKEYSSDNNNNKKL 78
          NKILLKEYSSDNNNNKKL
Sbjct: 61 NKILLKEYSSDNNNNKKL 78


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score = 25.8 bits (55), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7   WILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQHNKILLK 66
           WIL++ +W ++  +P P F  R  Q+    L   S   K KG TF  + +   +  + ++
Sbjct: 124 WILNDIVWRKS--NPMPNFRGRRFQNAHETLIWASPSPKAKGYTFNYDALKAANEDVQMR 181


>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 496

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 52  KVEKVGDQHNKILLKEYSSDNNNN 75
           K++K G Q  K+LL E  +DN+ +
Sbjct: 202 KLDKFGLQGVKLLLGEGRTDNSGD 225


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 20.8 bits (42), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 23  PIFTTRHPQSYRIFLGSGSEVSKDKGITFK 52
           PI     P +  + +G G+ V +D   ++K
Sbjct: 334 PIMIEESPHAVNLPVGKGTTVFRDVFFSYK 363


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 20.4 bits (41), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 29  HPQSYRIFLGSGSEVSKD-----KGITFKVEKVGDQHNK 62
           H    R+F+    +  KD     + I +K++++ D H +
Sbjct: 360 HDIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQR 398


>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 707

 Score = 19.6 bits (39), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 41  SEVSKDKGITFKVEKVGDQHNKILLKEYSSDNNNNK 76
           SE S D      V   G +H K     Y++D+ +NK
Sbjct: 512 SEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNK 547


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,088
Number of Sequences: 1233
Number of extensions: 1806
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 328,796
effective HSP length: 48
effective length of query: 30
effective length of database: 269,612
effective search space:  8088360
effective search space used:  8088360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 31 (16.5 bits)