HHsearch alignment for GI: 254781016 and conserved domain: COG1947
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism].
Probab=98.44 E-value=4.2e-05 Score=56.04 Aligned_cols=261 Identities=18% Similarity=0.198 Sum_probs=142.5
Q ss_pred CEEEECC--CCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECC-EECCCCCHHHHHHHHHHHH
Q ss_conf 3789748--842488116776701175789843468127810799997178885799878-7256652068999999742
Q gi|254781016|r 23 KSSAFLP--SNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNG-QKISSQSSFFKKTTQFCDL 99 (355)
Q Consensus 23 ~~ta~ap--~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG-~~~~~~~~~~~ri~~~l~~ 99 (355)
T Consensus 3 ~~~~~apAKiNL~L-~V~gkr~DGY--Hel~sl~~~id-~~D~l~i~~~~~~~~~~~~~~~~~lp~~~---NLv~rAa~l 75 (289)
T COG1947 3 STKFPAPAKINLFL-HVTGKRADGY--HELETLFQFID-LGDELTIRPRDDDGFIVLGTFADGLPTDE---NLVYRAAEL 75 (289)
T ss_pred CEEEECCCEEEEEE-EECCCCCCCC--EEEEEEEEEEC-CCCEEEEEECCCCCCEEECCCCCCCCCCC---HHHHHHHHH
T ss_conf 36872154488888-8535589984--34589999941-48789999877887269667777887743---199999999
Q ss_pred HHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC
Q ss_conf 1676194--39999850233211012322479999999999818899988999886521353034310562002578987
Q gi|254781016|r 100 FRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ 177 (355)
Q Consensus 100 ~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~ 177 (355)
T Consensus 76 l~~~~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPffl~g~tA~-a~G~GE 154 (289)
T COG1947 76 LRKRTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPFFLSGGTAF-AEGRGE 154 (289)
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCEE-EEECCC
T ss_conf 9998689998279998368655767664578999999999986799999999999998689867143188569-887363
Q ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 65441310156668642158999728766752-10567988761856899997305509999999980999999999999
Q gi|254781016|r 178 NGMDSFAVPFNNQWPDLRIGLLKIIDREKKIG-SREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355)
Q Consensus 178 ~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vs-St~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355)
T Consensus 155 ~---l--~~~~~-~~~~~~vl~--~P---~v~vsT~~vy~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~ 212 (289)
T COG1947 155 K---L--EPLED-PPEKWYVLA--KP---GVGVSTKEVYK----DPELT----RNTPKSEPLIAALSLENLKQIAP---F 212 (289)
T ss_pred E---E--EECCC-CCCCEEEEE--EC---CCCCCHHHHHC----CCCCC----CCCCCCHHHHHHHHHHHHHHHHH---H
T ss_conf 5---1--47777-887529999--58---98998799970----86756----46677224558786552776410---2
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCCEEEEEECHH-HHHHHHHHHHH
Q ss_conf 9998999870389956865788999999999974289-61999977798179995589-89999999763
Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGPNLKLLFTHK-IEETIKQFFPE 324 (355)
Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGPNv~il~~~~-~~~~i~~~l~~ 324 (355)
T Consensus 213 ~~NdLe~~~~~~~p-------~v---~~~~~~l~~~ga~~~~mS-GSGstvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 213 LINDLEKVALRLYP-------EV---KEALSELLEYGALPARMS-GSGSTVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred CCCCHHHHHHHHCH-------HH---HHHHHHHHHCCCCCCEEE-CCCCCEEEEECCHHHHHHHHHHHHC
T ss_conf 03645788988586-------89---999999764135443682-4787289993876889999987430