HHsearch alignment for GI: 254781016 and conserved domain: PRK00128

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.40  E-value=1.7e-09  Score=86.84  Aligned_cols=260  Identities=16%  Similarity=0.180  Sum_probs=155.8

Q ss_pred             CCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCC-
Q ss_conf             4884248811677670117578984346812781079999717888579987872566520689999997421676194-
Q gi|254781016|r   28 LPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKV-  106 (355)
Q Consensus        28 ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~-  106 (355)
T Consensus         7 AKINL~L-~V~~kr~dG--yH~l~sl~~~i~-l~D~i~i~~~~~~~i~~~~~~~~~p~~~~--Nlv~ka~~~l~~~~~~~   80 (281)
T PRK00128          7 AKINLSL-DVLGKREDG--YHEVEMIMTTID-LADRLEIEKLKEDKIVVESNSGYVPNDER--NLAYKAAKLLKERYNIK   80 (281)
T ss_pred             CCEECCE-ECCCCCCCC--CCEEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHCCC
T ss_conf             5583443-028838999--883568999916-87299999978998899978887888985--69999999999974999


Q ss_pred             -EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEEE
Q ss_conf             -3999985023321101232247999999999981889998899988652135303431056200257898765441310
Q gi|254781016|r  107 -YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAV  185 (355)
Q Consensus       107 -~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a~  185 (355)
T Consensus        81 ~~~~I~l~K~IP~gaGLGGGSSdAAa~L~~ln~l~~~~ls~~eL~~la~~iGaDVpffl~g~~a~~-~G~Ge~---i--~  154 (281)
T PRK00128         81 KGVRITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLKIGSDVPFCIYGGTALA-TGRGEK---I--T  154 (281)
T ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCCEEE-ECCCCE---E--E
T ss_conf             874899985798667778512889999999999847999999999999872788441104775698-558967---6--7


Q ss_pred             ECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             15666864215899972876675210567988761856899997305509999999980999999999999999899987
Q gi|254781016|r  186 PFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATM  265 (355)
Q Consensus       186 ~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~  265 (355)
T Consensus       155 ~l~-~~~~~~~--vLv~P~~-~v-sT~~vy~~~~~~~-------~~~~~~~~~~~~l~~~d~~~~~~~l~N---dle~~a  219 (281)
T PRK00128        155 PLK-PPPSCWV--VLAKPDI-GV-STKDVYKNLDLDK-------IYHPDTEKLIEAIENGDYQGICASMGN---VLEPVT  219 (281)
T ss_pred             ECC-CCCCCEE--EEECCCC-CC-CHHHHHHHCCCCC-------CCCCCHHHHHHHHHCCCHHHHHHHHHH---HHHHHH
T ss_conf             888-7888589--9988999-97-8699998528002-------678776889998862899999886340---379999


Q ss_pred             HCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEEEEEECH-HHHHHHHHHHHHC
Q ss_conf             03899568657889999999999742896-199997779817999558-9899999997632
Q gi|254781016|r  266 IAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNLKLLFTH-KIEETIKQFFPEI  325 (355)
Q Consensus       266 ~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv~il~~~-~~~~~i~~~l~~i  325 (355)
T Consensus       220 ~~~-------~P~i~~i~~~l---~~~Ga~~~~mS-GSGst~Falf~~~~~A~~~~~~Lk~~  270 (281)
T PRK00128        220 LKK-------HPEIAKIKERM---LKFGADGALMS-GSGPTVFGLFDDESRAQRIYNGLKGF  270 (281)
T ss_pred             HHH-------CHHHHHHHHHH---HHCCCCEEEEE-CCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             985-------95999999999---85799858987-72121899989999999999986714