HHsearch alignment for GI: 254781016 and conserved domain: PRK00128
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.40 E-value=1.7e-09 Score=86.84 Aligned_cols=260 Identities=16% Similarity=0.180 Sum_probs=155.8
Q ss_pred CCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCC-
Q ss_conf 4884248811677670117578984346812781079999717888579987872566520689999997421676194-
Q gi|254781016|r 28 LPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKV- 106 (355)
Q Consensus 28 ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~- 106 (355)
T Consensus 7 AKINL~L-~V~~kr~dG--yH~l~sl~~~i~-l~D~i~i~~~~~~~i~~~~~~~~~p~~~~--Nlv~ka~~~l~~~~~~~ 80 (281)
T PRK00128 7 AKINLSL-DVLGKREDG--YHEVEMIMTTID-LADRLEIEKLKEDKIVVESNSGYVPNDER--NLAYKAAKLLKERYNIK 80 (281)
T ss_pred CCEECCE-ECCCCCCCC--CCEEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHCCC
T ss_conf 5583443-028838999--883568999916-87299999978998899978887888985--69999999999974999
Q ss_pred -EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEEE
Q ss_conf -3999985023321101232247999999999981889998899988652135303431056200257898765441310
Q gi|254781016|r 107 -YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAV 185 (355)
Q Consensus 107 -~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a~ 185 (355)
T Consensus 81 ~~~~I~l~K~IP~gaGLGGGSSdAAa~L~~ln~l~~~~ls~~eL~~la~~iGaDVpffl~g~~a~~-~G~Ge~---i--~ 154 (281)
T PRK00128 81 KGVRITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLKIGSDVPFCIYGGTALA-TGRGEK---I--T 154 (281)
T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCCEEE-ECCCCE---E--E
T ss_conf 874899985798667778512889999999999847999999999999872788441104775698-558967---6--7
Q ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 15666864215899972876675210567988761856899997305509999999980999999999999999899987
Q gi|254781016|r 186 PFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATM 265 (355)
Q Consensus 186 ~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~ 265 (355)
T Consensus 155 ~l~-~~~~~~~--vLv~P~~-~v-sT~~vy~~~~~~~-------~~~~~~~~~~~~l~~~d~~~~~~~l~N---dle~~a 219 (281)
T PRK00128 155 PLK-PPPSCWV--VLAKPDI-GV-STKDVYKNLDLDK-------IYHPDTEKLIEAIENGDYQGICASMGN---VLEPVT 219 (281)
T ss_pred ECC-CCCCCEE--EEECCCC-CC-CHHHHHHHCCCCC-------CCCCCHHHHHHHHHCCCHHHHHHHHHH---HHHHHH
T ss_conf 888-7888589--9988999-97-8699998528002-------678776889998862899999886340---379999
Q ss_pred HCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEEEEEECH-HHHHHHHHHHHHC
Q ss_conf 03899568657889999999999742896-199997779817999558-9899999997632
Q gi|254781016|r 266 IAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNLKLLFTH-KIEETIKQFFPEI 325 (355)
Q Consensus 266 ~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv~il~~~-~~~~~i~~~l~~i 325 (355)
T Consensus 220 ~~~-------~P~i~~i~~~l---~~~Ga~~~~mS-GSGst~Falf~~~~~A~~~~~~Lk~~ 270 (281)
T PRK00128 220 LKK-------HPEIAKIKERM---LKFGADGALMS-GSGPTVFGLFDDESRAQRIYNGLKGF 270 (281)
T ss_pred HHH-------CHHHHHHHHHH---HHCCCCEEEEE-CCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 985-------95999999999---85799858987-72121899989999999999986714